wilke / mg-rast-tools

Repository of script tools, examples, and contributed code for using the MG-RAST API

Repository of script tools, examples, and contributed code for using the MG-RAST API

Repository of scripts and libraries for using the MG-RAST API and MG-RAST data

ABOUT

• tools - robust scripts for complex use cases written by MG-RAST developers

• examples - simple scripts showing API access written by MG-RAST developers

• contrib - code contributed by third parties

DEPENDENCIES

• matR - https://github.com/MG-RAST/matR

• Shock libs - https://github.com/MG-RAST/Shock/tree/master/libs

• Python libs

  • prettytable - https://pypi.python.org/pypi/PrettyTable
  • requests - http://docs.python-requests.org/en/latest
  • requests_toolbelt - https://github.com/sigmavirus24/requests-toolbelt
  • scipy - http://www.scipy.org
  • numpy - http://www.numpy.org

Python / Perl

In order for some scripts to run properly you have to add the lib directory to your PYTHONPATH and PERL5LIB. Please add the lib directory to your PYTHONPATH and PERL5LIB, or source the set_env.sh script inside this directory.