wqhf Goto Github PK

immuneresistance

This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

infercnv_hipo

apply inferCNV on multiple myeloma samples (DKFZ HIPO project)

intro-to-chipseq

Intro to ChIPseq using HPC

learn

my learning journey

learn-regex

Learn regex the easy way

libpku

贵校课程资料民间整理

machine-learning-notes

周志华《机器学习》手推笔记

managing-your-biological-data-with-python

manuscripts

modules

neoantigen_calling_pipeline

Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA

neoantigens

🏺 Exploring novel tumor epitope identification

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

no-free_vpn

亲测可用的 VPN。亲测有效的科学上网，同时支持 windows、mac、linux、ios 和 andrioid 系统。并提供 chrome、firefox、opera 等浏览器的插件使用。

orca

ORCA CIBERSORT project

paper-zhang2014

Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26

py37

My python and R's scripts

pyclonetsvgeneration_facets_or_titan

Combine snv maf, indel maf, and titan allelic copy number calls, from either FACETS or TITAN, into the .tsv input PyClone requires.

rcoursespring2017

R course materials for MSK Spring 2017

retained-intron-neoantigen-pipeline

Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.

rnaseq_overview

Short course describing the considerations for a successful RNA-seq experiment

rprojects

scplc

Codes for the scPLC project

scrna-seq

shiny.rstudio.com-tutorial

Slides and exercises for the video tutorial at https://shiny.rstudio.com/tutorial/

single-cell-analysis-of-nasopharyngeal-carcinoma

single-cell-papers-with-code

Papers with code for single cell related papers

somatic_mutations_gtex

Methods and analysis for Garcia-Nieto, et al. Somatic mutations

tama

Transcriptome Annotation by Modular Algorithms (for Iso-Seq data)

tb_tcell_citeseq

Code for analysis of memory T cell CITE-seq data