xiazc / multibrain

A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!

multiBrain

A list of brain imaging databases with multiple scans per subject. Feel free to update the list via 'pull requests'.

Maclaren test-retest brain volume dataset

• Maclaren test-retest brain volume dataset
• https://openfmri.org/dataset/ds000239/
• Subjects
  • N = 3
  • 1 female, 2 males
  • 26, 30, 31 years old
• Data
  • 3T GE
  • sMRI
  • 20 scans
• Maclaren, Julian, et al. "Reliability of brain volume measurements: A test-retest dataset." Scientific data 1 (2014): 140037.

Day2day

• Day2day: investigating daily variability of magnetic resonance imaging measures over half a year
• Email to authors of https://bmcneurosci.biomedcentral.com/articles/10.1186/s12868-017-0383-y
• Subjects
  • N = 8
  • 6 female, 2 males
  • 24-32 years old
• Data
  • 3T Siemens
  • sMRI, rsfMRI, T2 Hippocampus, DTI, MRS
  • 11-50 scans
• Filevich, Elisa, et al. "Day2day: investigating daily variability of magnetic resonance imaging measures over half a year." BMC neuroscience 18.1 (2017): 65.

CCBD

• Center for Cognition and Brain Disorders (CCBD) at Hangzhou Normal University
• 10.6084/m9.figshare.2007483
• Subjects
  • N = 30
  • 15 females, 15 males
  • 20 to 30 years old
• Data
  • 3T GE
  • sMRI, rsfMRI
  • 10 scans
• Chen, Bing, et al. "Individual variability and test-retest reliability revealed by ten repeated resting-state brain scans over one month." PLoS One 10.12 (2015): e0144963.

HBN-SSI

• Healthy Brain Network Serial Scanning Initiative (HBN-SSI)
• http://fcon_1000.projects.nitrc.org/indi/hbn_ssi/index.html
• Subjects
  • N = 13
  • 8 females, 5 males
  • 21 to 42 years old (18-45 years old)
• Data
  • 1.5T Siemens
  • sMRI, rsfMRI, task fMRI, DKI
  • -14 scans
• O’Connor, David, et al. "The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions." GigaScience 6.2 (2017): 1-14.

MSC

• The Midnight Scan Club (MSC) dataset
• https://openfmri.org/dataset/ds000224/
• Subjects
  • N = 10
  • 5 females, 5 males
  • 24-34 years old
• Data
  • 3T Siemens
  • sMRI, T2, MRA, MRV, rsfMRI, task fMRI
  • 4 scans for sMRI/T2/MRA, 8 scans for MRV, 10 scans for rsfMRI/task fMRI
• Gordon, Evan M., et al. "Precision Functional Mapping of Individual Human Brains." Neuron (2017).

MyConnectome

• The MyConnectome project
• http://myconnectome.org/wp/
• Subjects
  • N = 1
  • Male
  • 45 years old
• Data
  • 3T Siemens
  • sMRI, rsfMRI, task fMRI, T2
  • 104 scans
• Poldrack, Russell A., et al. "Long-term neural and physiological phenotyping of a single human." Nature communications 6 (2015): 8885.

Kirby Weekly

• Single-subject Resting state fMRI Reproducibility Resource
• http://www.nitrc.org/projects/kirbyweekly
• Subjects
  • N = 1
  • Male
  • 40 years old
• Data
  • 3T Philips
  • sMRI, rsfMRI
  • 158 scans
• Choe, Ann S., et al. "Reproducibility and temporal structure in weekly resting-state fMRI over a period of 3.5 years." PloS one 10.10 (2015): e0140134.

Reproducibility of quantitative structural and physiological MRI measurements

• Reproducibility of quantitative structural and physiological MRI measurements
• Subjects
  • N = 25
  • 5 females, 20 males
  • 18-41 years old
• Data
  • 3T Siemens
  • sMRI, dMRI, T2, ASL, MRS
  • 3 scans
• McGuire, Stephen A., et al. "Reproducibility of quantitative structural and physiological MRI measurements." Brain and Behavior (2017).

MASSIVE

• Multiple Acquisitions for Standardization of Structural Imaging Validation and Evaluation
• http://www.massive-data.org/
• Subjects
  • N = 1
  • Female
  • 25 years old
• Data
  • 3 Tesla system (Philips Achieva)
  • sMRI, dMRI
  • 18 different occasions
• Froeling, Martijn, et al. "“MASSIVE” brain dataset: Multiple acquisitions for standardization of structural imaging validation and evaluation." Magnetic resonance in medicine 77.5 (2017): 1797-1809.

National Taiwan University Hospital

• National Taiwan University Hospital
• No download link
• Subjects
  • N = 34
  • 19 females, 15 males
  • 34-85 years old
• Data
  • 1.5T & 3T, GE & Siemens
  • sMRI
  • 10-24 scans
• Yang, Chung-Yi, et al. "Reproducibility of brain morphometry from short-term repeat clinical MRI examinations: a retrospective study." PloS one 11.1 (2016): e0146913.

A sample of 8 healthy traveling subjects

• ?
• No download link
• Subjects
  • N = 8
  • 4 females, 4 males
  • 26.9 ± 4.3 years
• Data
  • 8 3 T MR scanners with 3 different machine models across the United States and Canada
  • sMRI, rsfMRI
  • 16 scans
• Cao, Hengyi, et al. "Toward Leveraging Human Connectomic Data in Large Consortia: Generalizability of fMRI-Based Brain Graphs Across Sites, Sessions, and Paradigms." Cerebral Cortex (2018).
• Sites
  • Emory University
  • Harvard University
  • University of Calgary
  • University of California Los Angeles (UCLA)
  • University of California San Diego (UCSD)
  • University of North Carolina Chapel Hill (UNC)
  • Yale University
  • Zucker Hillside Hospital (ZHH)

8 healthy traveling subjects

• ?
• No download link
• Subjects
  • N = 8
• Data
  • 3T scanners/ 8 healthy adults acted as traveling phantoms, and were scanned twice at each of the four sites
  • 1.5 T Siemens Sonata at UA, 3 T Siemens Trio at QU and UM, and 3 T Philips Intera at UBC
• Long, Xiangyu, et al. "Sensorimotor network alterations in children and youth with prenatal alcohol exposure." Human brain mapping (2018).
• Sites
  • University of Alberta (UA)
  • Queen's University (QU)
  • University of Manitoba (UM)
  • University of British Columbia (UBC)