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SLIP - Synthetic Landscape Inference for Proteins
SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions. See our preprint
Status
In progress
Instructions
Tested on python >= 3.7
We recommend installing into a virtual environment to isolate dependencies (see https://docs.python.org/3/library/venv.html).
python3 -m venv env
source env/bin/activate
To install:
pip3 install -q -r requirements.txt
To run the unit tests:
bash -c 'for f in *_test.py; do python3 $f || exit 1; done'
Example Usage
See this colab for an example of using a landscape.