xvazquezc Goto Github PK

anvio.org

The anvi'o community web page

anvio_import_parsers

assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

bioconda-recipes

Conda recipes for the bioconda channel.

book

cheatsheets

My cheatsheets

colabfold

Making Protein folding accessible to all via Google Colab!

conda-recipes

bioinformatics program recipes for the conda package manager

datadrivencv-academic

emblmygff3

An efficient way to convert gff3 annotation files into EMBL format ready to submit.

funannotate

Eukaryotic Genome Annotation Pipeline

gene2product

Curated list of gene names and product descriptions that pass NCBI genome submission rules.

genome_annotation_with_maker2

graftm

GraftM - Rapid community profiles from metagenomes

hera-pbspro

This is a PBSPro (Protable Batch System) based pipeline to perform HERA (Highly Efficient Repeat Assembly) program.

jekyll-scholar

jekyll extensions for the blogging scholar

markdown-cv

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

metabolic-hmms

HMM databases for microbial metabolic genes of environmental/biogeochemical importance.

multiphate2

multiPhATE with comparative genomics

one-liners

Just a collection of usefull one-liners, often a bit too long to remember

otusamples2krona

Simple script to generate Krona charts for all samples in an OTU table file

penryntutorial

Metagenomics tutorials for Penryn symposium

singlem

De-novo OTUs from shotgun metagenomes

stuff

Repository for miscellaneous stuff not worth of independent repos

xvazquezc.github.io