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ab3p

Abbreviation definition dection library trained on PubMed abstracts

accumulo

Apache Accumulo

accumulo-python3

Build Python 3 applications that integrate with Apache Accumulo

actionai

custom human activity recognition modules by pose estimation and cascaded inference using sklearn API

adrtarget

Machine learning guided association of adverse drug reactions with in vitro off-target pharmacology

allennlp

An open-source NLP research library, built on PyTorch.

allofplos

Repository for the allofplos project.

alternative_clouds

amundsen

Amundsen is a metadata driven application for improving the productivity of data analysts, data scientists and engineers when interacting with data.

apriori

Python Implementation of Apriori Algorithm for finding Frequent sets and Association Rules

arxiv-miner

arxiv_miner is a toolkit for mining research papers on CS ArXiv.

awesome-robotic-tooling

Just a bunch of powerful robotic resources and tools for professional robotic development with ROS in C++ and Python.

bayesmark

Benchmark framework to easily compare Bayesian optimization methods on real machine learning tasks

bio-yodie

Bio-YODIE is GATE's biomedical named entity linking pipeline.

bioawk

BWK awk modified for biological data

bioconceptvec

biograkn

BioGrakn Knowledge Graph

biomedicus3

BioMedICUS: A biomedical and clinical NLP engine.

bionev

Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations"

biosentvec

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

biosql

biosyntax

Syntax highlighting for computational biology

biowordvec

blink

This is main code for Steorts (2015), which is also on CRAN. Please cite the paper/code if you find this useful.

bluebert

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

cache

Cache dependencies and build outputs in GitHub Actions

cancer-hallmark-cnn

Cancer hallmark CNN

cath-tools

Protein structure comparison tools such as SSAP and SNAP

causalml

Uplift modeling and causal inference with machine learning algorithms

cbioportal

cBioPortal for Cancer Genomics