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opal

A web framework for building highly usable healthcare applications.

origin

The self-managing, auto-upgrading, Kubernetes distribution for everyone

panel

A high-level app and dashboarding solution for Python

paperetl

ETL processes for medical and scientific papers

paperwhisperer

Automatic voice-synthetised summaries of latest research papers on arXiv

parsr

Transforms PDF, Documents and Images into Enriched Structured Data

paxtools

The BioPAX Object Model, API and utilities implemented in Java

pdbremix

analyse PDB files, run molecular-dynamics & analyse trajectories

pennai

the Penn AI engine.

pervane

Plain text file based note taking and knowledge base building tool

pgr

A Silver Standard Corpus of Human Phenotype-Gene Relations

phandango

an interactive viewer for populations of bacterial genomes linked by a phylogeny

pipeline-helloworld

Used for quick pipeline checks

plato-research-dialogue-system

This is the Plato Research Dialogue System, a flexible platform for developing conversational AI agents.

polyglottus

A format for writing a script that contains blocks in different languages that will run in multiple kernels and potentially intercommunicate.

ppi-typed-relation-extractor

Relation extraction for protein to protein interactions to extraction strongly typed PPI relations.. My research topic.. So work in progress

ppmd

A Performance-Portable Framework For Atomistic Simulations

prettyerrors

Prettify Python exception output to make it legible.

probprog18

projects

🪐 End-to-end NLP workflows from prototype to production

prophet

Tool for producing high quality forecasts for time series data that has multiple seasonality with linear or non-linear growth.

proteinfer

pubmed-downloader

Downloads the entire pubmed abstracts

pubvenn

PubMed meets Venn diagrams

pydeps

Python Module Dependency graphs

pyflow

Visual scripting framework for python - https://wonderworks-software.github.io/PyFlow

pyrgg

🔧 Python Random Graph Generator

pysurvival

Open source package for Survival Analysis modeling

pytextrank

Python implementation of TextRank for phrase extraction and summarization of text documents

python-accumulo

Apache Accumulo client for Python