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tolypocladium_inflatum_paper's Introduction

Tolypocladium_inflatum_paper

Scripts and customized scripts used in this paper

Requirements:

  • python 3.0+
  • R

nucmer_to_inversion.sh: shell script to run NUCmer comparison and output inverted regions
crude_search_inversion.py: from individual mapping blocks to the identification of reliable inverted genome regions inversion_idx.py: calculate inversion index
genometricorr.r: R script to run GenometriCorr package
tools.r: R scripts to parse GenometriCorr result

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