Hassan Rasouli's Projects
Protein and nucleic acid validation service
MPBuilder provides building capability for protein-detergent, bicelle, and lipid-scaffold (saposin nanoparticles, nanodiscs) complexes and links this to the ATSAS software package modules for model refinement and validation against the SAXS data.
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
Fork of Python megawidgets with essential patches applied
python Circos
A python toolkit for analysing membrane protein-lipid interactions.
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Quick Read Quality Control
R code & Python code for creating Ramachandran Plot (MAT Feature)
Phylogenetic tree management, exploration and display package
Convert bibliography files between various formats, including BibTeX, BibLaTeX, PubMed, RIS, and Bibentry. This is an R port of the bibutils utilities plus R manipulation of bibiliography objects.
Molecular De Novo design using Recurrent Neural Networks and Reinforcement Learning
website for the rnaseq course
This package contains deep learning models and related scripts for RoseTTAFold
Personal Script Library- These scripts are subject to change and breakage, early and often.
an R/shiny application for creation of Circos plot interactively
Windowed Adaptive Trimming for fastq files using quality
SRA Tools
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
Free tools for biologists and biochemists
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
VS-Analysis: A Python Script to Analyze Virtual Screening Results of Autodock Vina