zengjiexia / act Goto Github PK
View Code? Open in Web Editor NEWAggregates Characterization Toolkit for fluorescence microscopy image analysis.
License: Apache License 2.0
Aggregates Characterization Toolkit for fluorescence microscopy image analysis.
License: Apache License 2.0
Apart from the standard file name required for videos to be imported, i.e. X?Y?R?W?C?, the system will treat two files as the same if the have the same prefix X?Y?R?W?C?.
For example - I now have to files: X0Y0R1W1C0_561 and X0Y0R1W1C0_638 or X0Y0R1W1C0_561_cycle0 and X0Y0R1W1X0_561_cycle1, the code can only analyse the first video C0Y0R1W1C0_561 or X0Y0R1W1C0_561_cycle0 but not X0Y0R1W1C0_638 or X0Y0R1W1X0_561_cycle1,
It would be great if the following functions can be added in the thred_results csv files in the diffraction-limited analyses:
Mode: CMD
Problem: generate_reports() being interrupted and exit the program without any error message. The problem only occurs when generate_reports() is called right after calling call_ComDet_2().
Solution: Temporary solution would be calling generate_reports() again.
I now have two videos super-constructed and drift corrected. Well done.
Tried filtering and cluster analyses, a couple of problems exist. I also have one more suggestion.
Problems:
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