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secram's Issues

Failed to test the tool

Dear authors,

I am trying to test the tool on Debian GNU/Linux 10, I have this java information:

OpenJDK Runtime Environment (build 11.0.1-internal+0-adhoc..src)
OpenJDK 64-Bit Server VM (build 11.0.1-internal+0-adhoc..src, mixed mode) 

and trying to compile the tool by running javac Main.java and I got the following output:

$ javac Main.java
Main.java:41: error: package org.bouncycastle.util.encoders does not exist
import org.bouncycastle.util.encoders.Base64;
                                     ^
Main.java:43: error: package com.sg.secram.encryption does not exist
import com.sg.secram.encryption.SECRAMEncryptionFactory;
                               ^
Main.java:44: error: package com.sg.secram.example does not exist
import com.sg.secram.example.Bam2SecramDir;
                            ^
Main.java:45: error: package com.sg.secram.example does not exist
import com.sg.secram.example.Bam2SecramFile;
                            ^
Main.java:46: error: package com.sg.secram.example does not exist
import com.sg.secram.example.Secram2BamFile;
                            ^
Main.java:48: error: package net.sourceforge.argparse4j does not exist
import net.sourceforge.argparse4j.ArgumentParsers;
                                 ^
Main.java:49: error: package net.sourceforge.argparse4j.inf does not exist
import net.sourceforge.argparse4j.inf.ArgumentParser;
                                     ^
Main.java:50: error: package net.sourceforge.argparse4j.inf does not exist
import net.sourceforge.argparse4j.inf.ArgumentParserException;
                                     ^
Main.java:51: error: package net.sourceforge.argparse4j.inf does not exist
import net.sourceforge.argparse4j.inf.Namespace;
                                     ^
Main.java:72: error: cannot find symbol
		ArgumentParser parser = ArgumentParsers
		^
  symbol:   class ArgumentParser
  location: class Main
Main.java:72: error: cannot find symbol
		ArgumentParser parser = ArgumentParsers
		                        ^
  symbol:   variable ArgumentParsers
  location: class Main
Main.java:99: error: cannot find symbol
		Namespace ns = null;
		^
  symbol:   class Namespace
  location: class Main
Main.java:102: error: cannot find symbol
		} catch (ArgumentParserException e) {
		         ^
  symbol:   class ArgumentParserException
  location: class Main
Main.java:111: error: cannot find symbol
			key = Base64.decode(reader.readLine());
			      ^
  symbol:   variable Base64
  location: class Main
Main.java:119: error: cannot find symbol
			key = SECRAMEncryptionFactory.generateSecret(24);
			      ^
  symbol:   variable SECRAMEncryptionFactory
  location: class Main
Main.java:122: error: cannot find symbol
			writer.write(new String(Base64.encode(key)));
			                        ^
  symbol:   variable Base64
  location: class Main
Main.java:125: error: cannot find symbol
			Bam2SecramFile.bam2secram(ns.getString("input"),
			^
  symbol:   variable Bam2SecramFile
  location: class Main
Main.java:128: error: cannot find symbol
			Secram2BamFile.secram2bam(ns.getString("input"),
			^
  symbol:   variable Secram2BamFile
  location: class Main
Main.java:131: error: cannot find symbol
			Bam2SecramDir.convertDirectory(ns.getString("input"),
			^
  symbol:   variable Bam2SecramDir
  location: class Main
19 errors

I have the same errors while running java Main.java. Sorry I am not used to Java, it would be great if you could guide me.

Thanks in advance,

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