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View Code? Open in Web Editor NEWA library for compressing, encrypting, and querying alignment data.
License: Other
A library for compressing, encrypting, and querying alignment data.
License: Other
Dear authors,
I am trying to test the tool on Debian GNU/Linux 10, I have this java information:
OpenJDK Runtime Environment (build 11.0.1-internal+0-adhoc..src)
OpenJDK 64-Bit Server VM (build 11.0.1-internal+0-adhoc..src, mixed mode)
and trying to compile the tool by running javac Main.java
and I got the following output:
$ javac Main.java
Main.java:41: error: package org.bouncycastle.util.encoders does not exist
import org.bouncycastle.util.encoders.Base64;
^
Main.java:43: error: package com.sg.secram.encryption does not exist
import com.sg.secram.encryption.SECRAMEncryptionFactory;
^
Main.java:44: error: package com.sg.secram.example does not exist
import com.sg.secram.example.Bam2SecramDir;
^
Main.java:45: error: package com.sg.secram.example does not exist
import com.sg.secram.example.Bam2SecramFile;
^
Main.java:46: error: package com.sg.secram.example does not exist
import com.sg.secram.example.Secram2BamFile;
^
Main.java:48: error: package net.sourceforge.argparse4j does not exist
import net.sourceforge.argparse4j.ArgumentParsers;
^
Main.java:49: error: package net.sourceforge.argparse4j.inf does not exist
import net.sourceforge.argparse4j.inf.ArgumentParser;
^
Main.java:50: error: package net.sourceforge.argparse4j.inf does not exist
import net.sourceforge.argparse4j.inf.ArgumentParserException;
^
Main.java:51: error: package net.sourceforge.argparse4j.inf does not exist
import net.sourceforge.argparse4j.inf.Namespace;
^
Main.java:72: error: cannot find symbol
ArgumentParser parser = ArgumentParsers
^
symbol: class ArgumentParser
location: class Main
Main.java:72: error: cannot find symbol
ArgumentParser parser = ArgumentParsers
^
symbol: variable ArgumentParsers
location: class Main
Main.java:99: error: cannot find symbol
Namespace ns = null;
^
symbol: class Namespace
location: class Main
Main.java:102: error: cannot find symbol
} catch (ArgumentParserException e) {
^
symbol: class ArgumentParserException
location: class Main
Main.java:111: error: cannot find symbol
key = Base64.decode(reader.readLine());
^
symbol: variable Base64
location: class Main
Main.java:119: error: cannot find symbol
key = SECRAMEncryptionFactory.generateSecret(24);
^
symbol: variable SECRAMEncryptionFactory
location: class Main
Main.java:122: error: cannot find symbol
writer.write(new String(Base64.encode(key)));
^
symbol: variable Base64
location: class Main
Main.java:125: error: cannot find symbol
Bam2SecramFile.bam2secram(ns.getString("input"),
^
symbol: variable Bam2SecramFile
location: class Main
Main.java:128: error: cannot find symbol
Secram2BamFile.secram2bam(ns.getString("input"),
^
symbol: variable Secram2BamFile
location: class Main
Main.java:131: error: cannot find symbol
Bam2SecramDir.convertDirectory(ns.getString("input"),
^
symbol: variable Bam2SecramDir
location: class Main
19 errors
I have the same errors while running java Main.java
. Sorry I am not used to Java, it would be great if you could guide me.
Thanks in advance,
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