zimmerd / csbscaffold

Basic scaffold for biological data analysis using FSharp

CsbScaffold

CsbScaffold is meant to simplify F# data analysis using the CSBiology libraries.

It is easy to setup and provides you with a prototypical folder structure for an organized data analysis project.

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Setup

Prerequisites:

• git cli has to be installed
• fake cli has to be installed

After downloading just run the init.cmd.

This will download the packages.

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Usage

Start by renaming the projectName folder to the partcular project name. In order to include different projects duplicate the folder projectName in place.

CsbScaffold comprises of two folders:

.env:

• .aux | Place for auxiliary functions
• .lib | .dlls that are not managed by the paket manager
• .paket | library files managed by the paket manager

projectName:

• data : Place to store the raw measurement data
• documents : Documentation
• material : Additional information (e.g. related publication)
• presentation : Compiled information to present your work
• results : Results that are produced during data processing
• scripts : (e.g. .fsx files)