Zvi Baratz's Projects
Pipeline for fMRI analysis of the cortical lamination patterns.
A collection of useful .gitignore templates
The NiPreps Community's Governance Documents
A JupyterLab extension to run and hide code cells.
Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)
Python library for audio and music analysis
A community dedicated to supporting tools for technical and scientific communication and interactive computing
Machine Learning for Neuroscience
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
MNELAB – a GUI for MNE
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Textbook for NESC 3505, Neural Data Science, at Dalhousie University
Python package to access a cacophony of neuro-imaging file formats
Machine learning for NeuroImaging in Python
Workflows and interfaces for neuroimaging packages
The NiPreps' Reporting and Visualization system - report templates and "reportlets"
Neuroimaging widgets for jupyter notebooks
Common workflows for MRI (anatomical, functional, diffusion, etc)
The leading native Python SSHv2 protocol library.
Read, modify and write DICOM files with python code
getting started with dicom in python
A database manager for neuroscience
simple pytest tutorial
Causal Inference for the Brave and True. A light-hearted yet rigorous approach to learning about impact estimation and causality.
Python for Neuroscientists course textbook
Example repo
Repo for reproducible coding workshop
Code for the analysis of cortical layer distribution data