zzzbadminton / farnet

we propose a novel deep network, named feature aggregation and refinement network (FARNet), for the automatic detection of anatomical landmarks.

Feature Aggregation and Refinement Network for 2D Anatomical Landmark Detection

Overview

Localization of anatomical landmarks is essential for clinical diagnosis, treatment planning, and research. In this paper, we propose a novel deep network, named feature aggregation and refinement network (FARNet), for the automatic detection of anatomical landmarks. To alleviate the problem of limited training data in the medical domain, our network adopts a CNN pre-trained on natural images as the backbone network and several popular networks have been compared. Our FARNet also includes a multi-scale feature aggregation module for multiscale feature fusion and a feature refinement module for high-resolution heatmap regression. Coarse-to-fine supervisions are applied to the two modules to facilitate the endto-end training. We further propose a novel loss function named Exponential Weighted Center loss for more accurate heatmap regression, which focuses on the losses from the pixels near landmarks and suppresses the ones from far away. Our network has been evaluated on three publicly available anatomical landmark detection datasets, including cephalometric radiographs, hand radiographs, and spine radiographs, and achieves state-of-art performances on all three datasets.

Data

In this paper, we evaluate our landmark detection network on three public benchmark data sets, a cephalometric X-rays dataset [1], a hand X-rays dataset [2] and a Spinal AnteriorPosterior (AP) X-rays dataset [3].

How to use

Dependencies

This tutorial depends on the following libraries:

• pytorch = 1.0.1
• numpy = 1.18.5
• python >= 3.6
• xlwt

config.py

You should set the image path in config by yourself

Run main.py

Run main.py to train the model and test its performance

Some results

Reference

[1] C.-W. Wang, C.-T. Huang, J.-H. Lee, C.-H. Li, S.-W. Chang, M.-J.Siao, T.-M. Lai, B. Ibragimov, T. Vrtovec, O. Ronneberger, et al., “A benchmark for comparison of dental radiography analysis algorithms,” Medical image analysis, vol. 31, pp. 63–76, 2016.
[2] C. Payer, D. ˇStern, H. Bischof, and M. Urschler, “Integrating spatial configuration into heatmap regression based cnns for landmark localization,” Medical Image Analysis, vol. 54, pp. 207–219, 2019.
[3] H. Wu, C. Bailey, P. Rasoulinejad, and S. Li, “Automatic landmark estimation for adolescent idiopathic scoliosis assessment using boostnet,” in International Conference on Medical Image Computing and ComputerAssisted Intervention, 2017.