alchemab / antiberta Goto Github PK

Hi, when I try to load the tokenizer I get following error:
HTTPError: 401 Client Error: Unauthorized for url: https://huggingface.co/antibody-tokenizer/resolve/main/vocab.json

I was wondering if the tokenizer has been removed?

I can't find the datasets file which prevents me from converting the data to dateset.I would appreciate it if you could provide the datesets.

Greetings,

I am trying to fine tune your model in my own dataset. But when I instantiate the tokenizer and model through huggingface,
HTTPError: 401 Client Error: Unauthorized for url: https://huggingface.co/antibody-tokenizer/resolve/main/vocab.json. This error occurs which I think is because this is a private model not available in hugginface?

Can you give me access to the tokenizer and model?

Thankyou,
Palistha

I get an OSError while trying to run the paratope-prediction.ipynb.
OSError: We couldn't connect to 'https://huggingface.co' to load this model, couldn't find it in the cached files and it looks like antiberta-master is not the path to a directory containing a {configuration_file} file.
Checkout your internet connection or see how to run the library in offline mode at 'https://huggingface.co/docs/transformers/installation#offline-mode'.

Can you help me and tell me what I am doing wrong? I have the internet connection. Perhaps MODEL_DIR must be adjusted with the value "antiberta-master"?

Many thanks in advance!

Hi all, congratulations on the Cell Patterns paper. I am keen to give antiberta a try.

On the notebook, where it says "Inference - how to go from sequence to predicted sequence" at the end, does that give a paratope string prediction similar to the Figure 4 sequences with dots in the paper?

Hey team, great work on this project. I noticed that the pre-training data snippets were removed from the repository back in April. Are they available as a HF dataset? Or available someplace else (besides the git history)?