alejoe91 / labbox-ephys

Labbox-ephys

Under development

Analysis and visualization of neurophysiology recordings and spike sorting results.

Installation instructions

You can either run labbox-ephys as a JupyterLab extension, a local web server, or as a service in the cloud.

• JupyterLab extension: labbox_ephys_widgets_jp
• Local web server: labbox_ephys web server
• Cloud service: not yet documented

Optionally host a compute resource server for calculations

If you want to use a remote computer to run calculations, then you will need to set up a hither compute resource server. Follow these instructions for hosting the compute resource.

As you run the configuration script, you will be prompted to give permission for labbox-ephys to access the compute resource. You should provide the kachery node ID for the machine running labbox ephys. You can find this within the labbox-ephys GUI by clicking on the CONFIG tab and then the COMPUTE RESOURCE tab. Alternatively, you can run kachery-p2p-node-info on the computer hosting the labbox-ephys server.

When you run the compute resource you will get a compute resource URI. See the CONFIG tab in the labbox-ephys GUI to learn how to configure labbox to use this hither compute resource URI.

Information for developers

Instructions on opening labbox-ephys in a development environment

Primary developers

Jeremy Magland and Jeff Soules

Center for Computational Mathematics, Flatiron Institute