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0.0 1.0 0.0 11.62 MB

A reimplementation of Hudson's classical ms simulator for modern data sets.

License: GNU General Public License v3.0

Makefile 0.12% C 47.06% Python 52.57% Meson 0.13% Dockerfile 0.03% C++ 0.04% Shell 0.04%

msprime's Introduction

msprime

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msprime is a Python API and command line interface for simulating the coalescent with recombination based on tskit. Please see the documentation for further information and installation instructions.

If you would like to help make msprime better, please see the developer documentation to get started.

If you are looking for help on a specific issue or would like to ask a question to fellow msprime users, please send an email to the mailing list. By asking questions on the mailing list, you can help to build a searchable knowledge base.

We are currently working towards our 1.0 release, the roadmap of issues are in this github milestone.

If you use msprime in your work, please cite the PLOS Computational Biology paper. See here for full citation details.

msprime's People

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agladstein avatar andrewkern avatar apragsdale avatar ashander avatar benjeffery avatar bguo068 avatar brianzhang01 avatar castedo avatar daniel-goldstein avatar domnelson avatar fbaumdicker avatar gertjanbisschop avatar grahamgower avatar gtsambos avatar hugovk avatar hyanwong avatar ivan-krukov avatar jeromekelleher avatar jgallowa07 avatar koelling avatar mergify[bot] avatar mmatschiner avatar molpopgen avatar nspope avatar petrelharp avatar saunack avatar shajoezhu avatar td329 avatar terhorst avatar tppsellinger avatar

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