Hello, I deployed this stack and it works well most of the time. In a particular multimer analysis job, I get the following error in the data prep step. I have not done anything to modify the reference databases... any suggestions?
I0629 14:43:25.019711 140053862020928 templates.py:268] Found an exact template match 7pd3_3.
Traceback (most recent call last):
--
File "/app/alphafold/run_aws_alphafold.py", line 636, in <module>
app.run(main)
File "/opt/conda/lib/python3.7/site-packages/absl/app.py", line 312, in run
_run_main(main, args)
File "/opt/conda/lib/python3.7/site-packages/absl/app.py", line 258, in _run_main
sys.exit(main(argv))
File "/app/alphafold/run_aws_alphafold.py", line 537, in main
run_features_only=FLAGS.run_features_only
File "/app/alphafold/run_aws_alphafold.py", line 216, in predict_structure
is_prokaryote=is_prokaryote)
File "/app/alphafold/alphafold/data/pipeline_multimer.py", line 271, in process
is_homomer_or_monomer=is_homomer_or_monomer)
File "/app/alphafold/alphafold/data/pipeline_multimer.py", line 214, in _process_single_chain
msa_output_dir=chain_msa_output_dir)
File "/app/alphafold/alphafold/data/pipeline.py", line 230, in process
hits=pdb_template_hits)
File "/app/alphafold/alphafold/data/templates.py", line 968, in get_templates
kalign_binary_path=self._kalign_binary_path)
File "/app/alphafold/alphafold/data/templates.py", line 737, in _process_single_hit
cif_string = _read_file(cif_path)
File "/app/alphafold/alphafold/data/templates.py", line 681, in _read_file
with open(path, 'r') as f:
FileNotFoundError: [Errno 2] No such file or directory: '/mnt/template_mmcif_dir/mmcif_files/7po4.cif'