Related Issues (20)
- Replace network code with pp-netlib
- Investigate slow assignment with full DBs vs ref DBs
- Can't download Enterococcus faecium databases HOT 2
- Wrong DB for E. coli HOT 2
- Increase maxIter with mandrake, and also add option HOT 1
- Query data not working HOT 10
- Unmatched parentheses in newick tree HOT 12
- Check for special characters in sample names
- Popunk installed with conda cannot import scikit-learn's KernelDensity
- Retreive source sequences from a database HOT 1
- --write-references option when running PopPUNK assign HOT 2
- visualize only query? HOT 1
- [database] A double-checked database of Neisseria meningitidis HOT 8
- Incorrect merge reporting from novel queries step HOT 1
- databases: reference only vs all genomes HOT 1
- IndexError: list index out of range (running current `master` branch) when running `poppunk_assign` HOT 25
- Add tutorial to documentation
- Update H. flu database to new sklearn version HOT 3
- ImportError: dlopen: cannot load any more object with static TLS HOT 4
- Sketchlib back end not available? HOT 8
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