Update H. flu database to new sklearn version about poppunk

[johnlees]

Sorry about this, I think this looks like it's due to scikit-learn changing their API, which I couldn't make backwards compatible, see: https://github.com/bacpop/PopPUNK#2022-08-04

The change in scikit-learn's API in v1.0.0 and above mean that HDBSCAN models fitted with sklearn <=v0.24 will give an error when loaded. If you run into this, the solution is one of:

• Downgrade sklearn to v0.24.
• Run model refinement to turn your model into a boundary model instead (this will change clusters).
• Refit your model in an environment with sklearn >=v1.0.

If this is a common problem let us know, as we could write a script to 'upgrade' HDBSCAN models. See issue #213 for more details.

Was the Haemophilus_influenzae_v1_refs database from our website? I should update it to fix this if so

[conmeehan]

Ah sorry, I didnt see that bit in the README. Surprised that it worked on the Ubuntu box, must have used a different scikit-learn and I just didn't notice.

The database was from your website, yes. I didn't try any other ones, just that one.

C