Comments (8)
Thanks for this contribution, we would be very happy to make this the updated version on the website as it sounds like you've done a much more thorough QC of the data. I might suggest that we use your sketches with the existing model fit, to maintain as much backwards compatibility as possible.
It may be convenient to upload your data here: https://imperialcollegelondon.app.box.com/f/3c4781a2f5ad4215b12a62099ed5cc63
Then I can run through with the previous model and update the website.
Please also let me know if you have any preferred citation or attribtion for this that you'd like me to include on the page.
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Thanks for this contribution, we would be very happy to make this the updated version on the website as it sounds like you've done a much more thorough QC of the data. I might suggest that we use your sketches with the existing model fit, to maintain as much backwards compatibility as possible.
It may be convenient to upload your data here: https://imperialcollegelondon.app.box.com/f/3c4781a2f5ad4215b12a62099ed5cc63 Then I can run through with the previous model and update the website.
Please also let me know if you have any preferred citation or attribtion for this that you'd like me to include on the page.
Hi John,
Many thanks for you detailed suggestion. I am really sorry for the late reply because our project have been delay for several months. Could I still upload the our database to your website?
https://imperialcollegelondon.app.box.com/f/3c4781a2f5ad4215b12a62099ed5cc63
The Neisseria_meningitidis database is 24GB in size, I think I can complete the submission this week
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Hi John,
I have complete the submission of Neisseria meningitidis database, named as Neisseria_meningitidis_26801_refs.tar.bz2 to your link https://imperialcollegelondon.app.box.com/f/3c4781a2f5ad4215b12a62099ed5cc63
What should I do next?
All the best,
Zhizhou
China CDC
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Apologies for the slow reply – I am currently away and will respond in due course
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Zhizhou,
Please accept my sincere apologies for the delay, I have to admit I forgot about your submission!
I have now added your database contribution to our ftp and website (will appear ~tomorrow).
Thank you very much for your contribution, which is greatly appreciated.
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Great, do let us know when your paper has been published and we'll be happy to update the reference
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Related Issues (20)
- visualize only query? HOT 1
- Incorrect merge reporting from novel queries step HOT 1
- databases: reference only vs all genomes HOT 1
- IndexError: list index out of range (running current `master` branch) when running `poppunk_assign` HOT 25
- Add tutorial to documentation
- Update H. flu database to new sklearn version HOT 3
- ImportError: dlopen: cannot load any more object with static TLS HOT 4
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- extract genome assemblies from database HOT 1
- What to expect for a sample that may have a mixture of two or more strains HOT 2
- PackagesNotFoundError HOT 2
- Generating jaccard distances per kmer HOT 3
- Enhancement: Assigning multiple GPSC types to mixed (meta-genome) samples HOT 2
- Zero Accessory Distances and Varied Core Distances in PopPUNK Fit Graph Analysis HOT 8
- Issue with a large Pseudomonas dataset HOT 4
- Listeria monocytogenes database is missing graph file. HOT 7
- Unable to create the group "/sketches/": (Links) Object already exists HOT 2
- Cytoscape includes strains from the entire database even with the --include-files option HOT 5
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