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danielarothschild avatar danielarothschild commented on August 26, 2024 1

Thanks for the reply.

Sorry I was having issues again, but finally found the cause of the error (path to sequences on the rlist.txt file was shortcutted and not complete...silly error) just fixed that and now it works smoothly. Thanks again!!

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johnlees avatar johnlees commented on August 26, 2024

Thanks for the clear description and versions

This is odd, and I think must be something with the installation. Is this installed with conda? What does conda list give?

Can you try with a different --output prefix too (with --create-db)?

Can you try with sketchlib directly? (see https://poppunk.bacpop.org/sketching.html#using-pp-sketchlib-directly)

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