Comments (2)
Makes perfect sense! I will change it to root_dir
.
from brainglobe-atlasapi.
thanks
from brainglobe-atlasapi.
Related Issues (20)
- [Feature] Add Ambystoma mexicanum (axolotl) atlas
- Decide what to do with `atlas_generation/main_script` HOT 1
- deal with local and remote atlas versions in validate_atlases.py HOT 9
- validate_atlases.py additional_references error HOT 5
- Add updated version of the kim atlas HOT 1
- [Feature] flexibly generate atlases with different resolutions
- perens_atlas alignment trouble with new version [BUG] HOT 4
- perens_lsfm_mouse_20um_v1.1 is oriented incorrectly HOT 1
- Use pooch to download data
- User is informed (twice) that the atlas is not the latest when they're updating it
- The warning that an atlas is not the latest is missing a space
- Standardise the axial resolution of the allen spinal cord atlas HOT 1
- Save atlases to `.brainglobe/atlases`
- Atlases should be returned by `brainglobe list` in alphabetical order
- Enforce standardised orientation
- Atlas resolution as an attribute, not a name.
- Move atlas generation code out of the `brainglobe-atlasapi` package
- Ensure all tests are run
- Ensure tests do not affect local system when run locally.
- [BUG] Kim developmental atlases fail validation
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