Doccumentation image display error

In the "README.rst" file, there is an attempt to showcase two images, but unfortunately, they are currently unreachable.

Links:
Build status
Python-check
Conda - Package Version

My suggestion:

• To update the links
• To remove the links all together

The provided demo code crashes, because the loaded scales contains int64 dtype columns, which your code can't handle.
The code crashes during CPP, the int64s are created in load_scales. If you convert the int64 to python ints (which should be able to fit the int64) it works. I'd recommend to either include this fix in your codebase, or handle int64s. Thanks

aa.options["verbose"] = False
df_scales = aa.load_scales()
df_scales = df_scales.astype({col: int for col in df_scales.select_dtypes(include='int64').columns})
non_numeric_columns = df_scales.select_dtypes(exclude=[np.number]).columns.tolist()
dict_dtype = dict(df_scales.dtypes)
non_numeric_columns2 = [(col, dict_dtype[col]) for col in dict_dtype if dict_dtype[col] not in [np.number, int, float]]
df_seq = aa.load_dataset(name="DOM_GSEC", n=50)

Documentation regarding dataset.

Hello, I was wondering whether you could provide some information regarding the DOM_GSEC dataset.

Your .tsv file contains the following entry:

Q14802 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSGHHPGETPPLITPGSAQS 0 37 59 NSPFYYDWHS LQVGGLICAGVLCAMGIIIVMSA KCKCKFGQKS

or as an object:

entry Q14802
sequence MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAG...
label 0
tmd_start 37
tmd_stop 59
jmd_n NSPFYYDWHS
tmd LQVGGLICAGVLCAMGIIIVMSA
jmd_c KCKCKFGQKS

the problem is that if you look into uniprot,

extracelluar domain (I believe this is jmd_n) is: NDLEDKNSPFYYDWHSLQ
transmembrane domain is: VGGLICAGVLCAMGIIIVMSA
cytoplasmic domain is (I believe this to be jmd_c): KCKCKFGQKSGHHPGETPPLITPGSAQS

and I can't resolve the difference.
I mean, the transmembrane domain seems to correspond to the entry in uniprot, the jmd_n terminal seems to be a random substring of the extracelluar domain, and the jmd_c seems to be only the first third of the cytoplasmic domain. Could you elaborate why? Thanks!

Hi,
I got the following error message:

I have checked, there is no such argument in check_X function in _utils/check_data.py:

Check all references and try to get same error locally as in readthedocs page.
Error message
"KeyError: 'refid'
Exception occurred:
File "/home/docs/checkouts/readthedocs.org/user_builds/aaanalysis/envs/latest/lib/python3.9/site-packages/docutils/nodes.py", line 652, in getitem
return self.attributes[key]
KeyError: 'refid'"