citiususc / construe Goto Github PK

In run_example.sh it says:

Reproduces the interpretation process for a given figure in the paper,
automatically choosing the proper parameters for fragment_processing.py.

All record fragments are under the examples/ directory, with a name
corresponding to the appropriate figure in the paper, from fig1 to fig10.

However, in the example folder fig1, fig2, and fig7 is missing.

Describe the issue

I have entered bash run_example.sh fig4 in my terminal.

Actual Behavior:
And the results turn out as follow:

It seems that it's different from the image in the readme.md,

• The horizontal axis doesn't start from 0, and it appears that the signal has been truncated

• The top is a little bit strange. There is a circle on the top, is that normal?

Expected Behavior:

As readme.md reveals, the expected result is

Environment

Operating System: Linux

Python Version: Python 3.8.18

Package Name and Version:

• brotlipy==0.7.0
• fonttools==4.25.0
• matplotlib==3.3.4
• munkres==1.1.4
• numpy==1.19.5
• ply==3.11
• pyperclip==1.8.2
• PyQt5-sip==12.11.0
• scikit-learn==0.22.1
• scipy==1.10.1

Hello,

I am working from macos M1 and it has been really hard for me to set up the environment.
I have tried creating environment from .yml file but got "Solving environment: failed" message. I have created new environment, installed numpy (because it wasn't working properly otherwise) and then updated environment from requirements.txt. I have then installed wfdb software package. While running the example script it gives me the error:

ModuleNotFoundError: No module named 'sklearn.svm.classes'

I would really appreciate if you could help me.
If you need any extra info, please let me know.

All the problem comes, as usual, from the stored classifier to delineate P-waves. Look for a robust alternative, probably using a library such as sklearn-onnx

The stored OneClassSVM object for P-Wave delineation is not able to perform predictions with sklearn v. 0.22. Probably the internal API has changed, so we need to rebuild or adapt the model.

The add_constraint method in ConstraintNetwork does not appear adding a constraint when the Variable input are the same.

Appear that python 3.7 implements new way of handling StopIteration exceptions, which breaks existing code unfortunately.

Lack python3 support.

Hello,
I have used construe_environment.yml to create the proper environment and while running the example script it gives me the error:
FileNotFoundError: [Errno 2] No such file or directory: 'signame'

I probably didn't installed something properly, but I can't figure it out.
If you need any extra info, please let me know