Comments (1)
Hi Bugie,
Thank you for your interest in our method! CPM can be used, since the CPM transformation should give the same value. However, FPKM cannot currently be used as input and was not tested for our approach. Please let me know if you have any additional questions!
Thanks again,
Brandon
from bisque.
Related Issues (20)
- Bulk already in CPM HOT 2
- Adipose dataset HOT 1
- how to prepare single cell input from multiple subjects as an input? HOT 1
- sim.data average proportions taking into account variation between replicates HOT 1
- How to interpreter Bisque result HOT 7
- Microarray data? HOT 1
- SeuratToExpressionSet HOT 3
- visualization HOT 1
- Zero expression in selected genes HOT 4
- Input format HOT 1
- Error in out[[t]]$coefs : $ operator is invalid for atomic vectors HOT 1
- Lack of "ground truth"markers and estimation HOT 1
- Negative proportion values HOT 1
- MarkerBasedDecomposition overlapping genes error HOT 3
- Prepare for upcoming Seurat v5 release
- Can I use TCGA's TPM data format for bulk RNA as input to bisque? HOT 1
- SeuratToExpressionSet error with seurat v5
- No overlapping genes between markers and bulk.eset HOT 2
- Error in CountsToCPM(bulk.eset) : Zero expression in selected genes for 1 cells
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from bisque.