Comments (1)
Hi Yoshi,
Thank you for your interest in our method! Unfortunately, Bisque is not currently designed for microarray data. Other methods, such as CIBERSORTx, have been designed with these data in mind.
Brandon
from bisque.
Related Issues (20)
- Bulk already in CPM HOT 2
- Adipose dataset HOT 1
- how to prepare single cell input from multiple subjects as an input? HOT 1
- sim.data average proportions taking into account variation between replicates HOT 1
- Use FPKM or CPM value of bulk RNA seq as input matrix HOT 1
- How to interpreter Bisque result HOT 7
- SeuratToExpressionSet HOT 3
- visualization HOT 1
- Zero expression in selected genes HOT 4
- Input format HOT 1
- Error in out[[t]]$coefs : $ operator is invalid for atomic vectors HOT 1
- Lack of "ground truth"markers and estimation HOT 1
- Negative proportion values HOT 1
- MarkerBasedDecomposition overlapping genes error HOT 3
- Prepare for upcoming Seurat v5 release
- Can I use TCGA's TPM data format for bulk RNA as input to bisque? HOT 1
- SeuratToExpressionSet error with seurat v5
- No overlapping genes between markers and bulk.eset HOT 2
- Error in CountsToCPM(bulk.eset) : Zero expression in selected genes for 1 cells
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from bisque.