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An R package for cell type prediction from single cell omics data

Home Page: https://ddiez.github.io/celltype/

License: Other

R 100.00%
singlecell bioinformatics single-cell

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celltype's Issues

Can't use predict_celltype for sce converted from Seurat

Hi there!
I'm interested in using celltype for data generated from 10X Genomics pipelines.
I used Seurat to read the 10X data and converted the Seurat object to SCE.
When I tried to use predict_celltype to read the resulted SCE, there came an error saying "Error in UseMethod("predict_celltype") :
no applicable method for 'predict_celltype' applied to an object of class "c('dgCMatrix', 'CsparseMatrix', 'dsparseMatrix', 'generalMatrix', 'dCsparseMatrix', 'dMatrix', 'sparseMatrix', 'compMatrix', 'Matrix', 'xMatrix', 'mMatrix', 'Mnumeric', 'replValueSp')" ".
How can I fix this problem?
Thank you so much! Looking forward to your reply.
BW

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