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License: MIT License
Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
License: MIT License
Hi,
First of all, thank you for the package. I think it's an interesting concept to link pseudotime to increase the robustness of CCI analysis. I tried running trasig using the example dataset and got the following file as an output:
oligodendrocyte-differentiation-clusters_marques_ligand_receptor_ti_slingshot_smallerWindow_nlap_20_3_permutation_results.pickle
When I tried running the analyze_outputs.py it returns an error because it can't locate "oligodendrocyte-differentiation-clusters_marques_ligand_receptor_ti_slingshot_smallerWindow_nlap_20_5_permutation_results.pickle", if I tried changing this output file name to match the one required, the result of my CCI analysis is very different from the one in the tutorial.
It's great for TraSig to use track results to infer cell-cell interactions👍. I saw in your paper that track files from Monocle can be used, but I didn't find the relevant guidance in your guidance file😭. How can Monocle result files be used in TraSig?
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