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View Code? Open in Web Editor NEWDirichlet-Multinomial Bayesian Variable Selection
License: GNU General Public License v3.0
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Using your algorithm
I am trying to find the category slope from your results.
I modified your code to provide a single factor of interest (covariate) simdata$XX[,-1][,1, drop=FALSE]. Am I doing it right
results = dmbvs(XX = simdata$XX[,-1][,1, drop=FALSE], YY = simdata$YY,
intercept_variance = 10, slab_variance = 10,
bb_alpha = 0.02, bb_beta = 1.98, GG = 1100L, thin = 10L, burn = 100L,
exec = file.path(".", "dev/dmbvs-master/dmbvs-master/code", "dmbvs.x"), output_location = "dev/dmbvs-master")
Given this code, I get these results. Which variable represents the coefficients of the slope?
Thanks a lot.
$alpha
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9]
[1,] -1.418886 -1.773251 -0.6072518 -1.999764 0.368678200 1.8489090 -0.03596430 1.4113050 -0.2893159
[2,] -1.314897 -1.871794 -0.6697463 -2.085728 0.371493700 1.7359070 -0.01327474 1.4113050 -0.2234813
[3,] -1.370964 -1.921591 -0.6133781 -1.814897 0.404262600 1.7359070 -0.23251500 1.2964670 -0.5911376
[4,] -1.416919 -1.913276 -0.6822267 -1.760696 0.124046800 1.6293680 -0.07024686 1.2964670 -0.3811138
[5,] -1.364073 -2.088071 -0.6769302 -1.810631 0.087089970 1.4904520 -0.10757790 1.1214230 -0.3186199
[6,] -1.392633 -1.564183 -0.5366176 -1.977052 0.288110600 1.5218230 -0.09302780 1.0519180 -0.4024529
[7,] -1.403465 -1.743942 -0.7887165 -1.846594 0.223784400 1.5255170 -0.24464200 1.1501160 -0.4686381
[8,] -1.470954 -1.638405 -0.7464406 -1.932476 0.170288900 1.3795650 -0.24464200 1.1501160 -0.4404021
[9,] -1.339014 -1.863100 -0.9364210 -1.843958 0.208295700 1.3693170 -0.24354250 1.1190840 -0.3708937
[10,] -1.300249 -2.064471 -0.8399152 -1.943197 0.208295700 1.3594750 -0.10324760 1.0728950 -0.5178355
[11,] -1.378601 -2.019455 -0.8561043 -1.876005 0.204871800 1.4703850 -0.19294230 1.1137910 -0.4038355
[12,] -1.419485 -1.957874 -0.9701486 -2.065526 0.215455200 1.4703850 -0.17076710 1.0075600 -0.5162941
[13,] -1.251857 -2.126180 -0.7389570 -1.902823 0.123604000 1.3054010 -0.41276680 1.0075600 -0.4811431
[14,] -1.586515 -2.081205 -0.9572208 -1.841197 0.214699300 1.3054010 -0.41276680 0.9942930 -0.6373646
[15,] -1.421381 -2.032756 -0.9572208 -1.841197 0.172743800 1.3856000 -0.41276680 0.9848687 -0.7268597
[16,] -1.614211 -2.123600 -0.8649054 -1.713356 0.156534300 1.2670890 -0.34953620 0.9848687 -0.5136049
[17,] -1.535029 -2.180116 -0.8398939 -1.652702 0.063646420 1.2877800 -0.42219630 0.9877969 -0.6322712
[18,] -1.674418 -2.082477 -1.0742510 -2.162506 0.063646420 1.2877800 -0.50408210 0.9877969 -0.6322712
[19,] -1.674418 -2.068488 -1.0089590 -2.015105 0.013865430 1.2877800 -0.43227930 0.9512558 -0.6322712
[20,] -1.524926 -1.978285 -1.0168150 -1.762213 0.011505670 1.2168740 -0.44271860 0.9512558 -0.5633552
[,10] [,11] [,12] [,13] [,14] [,15] [,16] [,17] [,18] [,19]
[1,] 0.456333800 -1.544854 -0.5275411 -0.4754097 0.7443196 -0.3788772 -1.492108 -2.229176 -1.808683 1.795332
[2,] 0.555898200 -1.436137 -0.6487684 -0.2794932 0.6826588 -0.2723497 -1.716684 -2.229176 -1.808683 1.832130
[3,] 0.541938600 -1.491051 -0.5612087 -0.4381451 0.8189546 -0.2760946 -1.435046 -2.099138 -1.836600 1.666011
[4,] 0.550287700 -1.854687 -0.5299152 -0.4381451 0.6698549 -0.5990416 -1.327075 -2.134195 -2.009483 1.746040
[5,] 0.449014400 -1.907405 -0.4804196 -0.4381451 0.6787001 -0.3350436 -1.749586 -2.317274 -2.076423 1.627049
[6,] 0.376834300 -1.874988 -0.6590886 -0.4480017 0.7390065 -0.3132182 -1.798487 -2.317274 -2.160021 1.627049
[7,] 0.312498000 -1.993874 -0.6449998 -0.5473154 0.5302061 -0.3132182 -1.608831 -2.390122 -1.966884 1.594449
[8,] 0.341303500 -1.774634 -0.5584018 -0.5599691 0.5286694 -0.3132182 -1.704802 -2.541592 -1.988154 1.594449
[9,] 0.291455800 -1.774634 -0.7024024 -0.8799518 0.4968055 -0.4840942 -1.606137 -2.122684 -2.174105 1.455281
[10,] 0.209449700 -1.790220 -0.7024024 -0.8510632 0.5693789 -0.5832100 -1.702927 -2.338948 -1.810332 1.455281
[11,] 0.209449700 -1.854762 -0.7296754 -0.5053499 0.5111702 -0.4541627 -1.524236 -2.391694 -1.974409 1.455281
[12,] 0.209449700 -1.943116 -0.7749396 -0.4722336 0.6015694 -0.6207317 -1.678882 -2.413987 -1.949357 1.485445
[13,] 0.240833500 -1.664922 -0.6314549 -0.7410894 0.6325014 -0.5691691 -1.507021 -2.456995 -2.489878 1.479519
[14,] 0.252936600 -1.984975 -0.6518966 -0.5975761 0.5387108 -0.5850941 -1.488017 -2.357476 -2.188097 1.373157
[15,] 0.346749700 -1.937689 -0.6171337 -0.6008068 0.4230485 -0.8198907 -1.488017 -2.303446 -1.813556 1.393589
[16,] 0.346749700 -1.885293 -0.6171337 -0.6008068 0.5004741 -0.4420135 -1.713864 -2.387198 -1.846792 1.422857
[17,] 0.224379400 -1.760764 -0.6712243 -0.5550274 0.4802942 -0.4668331 -1.701444 -2.313126 -1.846792 1.425832
[18,] 0.118290900 -1.760764 -0.6734823 -0.6445415 0.3922029 -0.4968474 -1.617311 -2.583829 -1.852902 1.411895
[19,] 0.175121600 -1.871591 -0.6854074 -0.5501105 0.3057655 -0.5379934 -1.730119 -2.583829 -2.198199 1.348453
[20,] 0.228192500 -1.631836 -0.6854074 -0.7410107 0.3839355 -0.6869462 -1.893069 -2.451747 -1.632314 1.348453
[,20] [,21] [,22] [,23] [,24] [,25] [,26] [,27] [,28] [,29]
[1,] 1.2170100 -1.827305 -0.10296620 -1.912746 1.5884860 -1.326364 -0.4549106 -1.111221 -2.630313 1.726517
[2,] 1.0893160 -2.219460 -0.09817377 -1.918113 1.5884860 -1.326364 -0.5048934 -1.111221 -2.679002 1.714246
[3,] 1.1737370 -1.965406 -0.31976170 -1.912513 1.4877040 -1.531270 -0.6366157 -1.216495 -2.876764 1.765809
[4,] 1.1737370 -1.860518 -0.20976330 -1.964482 1.4851920 -1.395709 -0.6957341 -1.292770 -2.601742 1.637422
[5,] 1.0198420 -2.015633 -0.34626980 -1.820645 1.4851920 -1.449136 -0.6957341 -1.206363 -2.561212 1.616046
[6,] 1.0198420 -1.882758 -0.35131830 -1.926781 1.4320860 -1.441886 -0.5445308 -1.053147 -2.623242 1.498881
[7,] 0.9137436 -2.322265 -0.25916850 -2.049717 1.3324550 -1.441886 -0.5208666 -1.386058 -2.720666 1.498881
[8,] 0.9942941 -2.051128 -0.05186930 -2.060564 1.4089240 -1.571096 -0.7001906 -1.417317 -2.874243 1.498881
[9,] 0.8396000 -1.993526 -0.33865770 -1.956571 1.3207750 -1.565242 -0.6263891 -1.528692 -2.561822 1.400101
[10,] 0.8306025 -1.825229 -0.33865770 -1.839220 1.3207750 -1.539036 -0.8724169 -1.528692 -2.561822 1.453102
[11,] 0.8306025 -2.172716 -0.30104680 -1.681292 1.3207750 -1.539036 -0.5690336 -1.445197 -2.615104 1.409908
[12,] 0.8306025 -2.163588 -0.33490730 -1.791161 1.2226440 -1.392054 -0.7287441 -1.320078 -2.766916 1.409908
[13,] 0.7859070 -1.962878 -0.50730740 -1.905183 1.2540760 -1.516840 -0.6804956 -1.320078 -2.708029 1.359005
[14,] 0.7859070 -2.014358 -0.11491410 -1.853725 1.3172830 -1.783103 -0.9269942 -1.208502 -2.657404 1.257277
[15,] 0.8266847 -1.976393 -0.19392020 -1.872357 1.1280630 -1.595184 -0.9957866 -1.550208 -2.646206 1.219284
[16,] 0.8266847 -2.097659 -0.45724810 -1.918346 1.1280630 -1.595184 -0.8328793 -1.550208 -2.729720 1.428809
[17,] 0.8630974 -1.848362 -0.42014820 -1.666628 1.1952350 -1.851976 -0.8062419 -1.374907 -3.071743 1.288396
[18,] 0.8896960 -1.955736 -0.46743130 -1.852852 1.1738480 -1.572063 -0.8062419 -1.467980 -3.115873 1.261024
[19,] 0.7281018 -2.214997 -0.43154030 -1.957945 1.2026870 -1.474509 -0.7940811 -1.267781 -3.126305 1.261024
[20,] 0.6438107 -1.941339 -0.28493290 -1.726966 1.1057230 -1.413931 -0.7097141 -1.498613 -2.896851 1.299437
[,30] [,31] [,32] [,33] [,34] [,35] [,36] [,37] [,38]
[1,] 1.4703970 -1.599531 0.59428430 -1.0006360 -0.9349933 -0.6094856 -1.891044 1.2031750 -0.3674350
[2,] 1.3453730 -1.500930 0.59428430 -1.1044940 -1.2568930 -0.5489470 -1.868935 1.3703610 -0.6285417
[3,] 1.4141660 -1.526182 0.57074930 -0.5932873 -0.8792015 -0.5720609 -1.950552 1.2544370 -0.4974890
[4,] 1.2927190 -1.656929 0.52181250 -0.8261369 -0.8672254 -0.6706910 -1.956362 1.1888070 -0.5427185
[5,] 1.2213090 -1.494219 0.40111990 -0.9637734 -1.0375920 -0.6610143 -2.112314 1.1888070 -0.4873734
[6,] 1.2585270 -1.615151 0.36816800 -0.9199978 -1.1935080 -0.7205450 -2.250223 1.0766420 -0.5194802
[7,] 1.1610170 -1.487729 0.32607720 -0.9270646 -0.9445677 -0.7406812 -2.523023 1.1513640 -0.5166327
[8,] 1.1167970 -1.536307 0.27303960 -0.9270646 -1.0712600 -0.8048086 -2.657673 1.0951650 -0.5107454
[9,] 1.1518530 -1.557524 0.28743010 -1.0117420 -1.1267520 -0.7775622 -2.563289 0.9616072 -0.5107454
[10,] 1.1518530 -1.486922 0.19023130 -1.0517290 -1.2363460 -0.6760320 -2.376480 1.1460940 -0.7848961
[11,] 1.0792550 -1.486922 0.29939160 -1.0416210 -1.0552840 -1.0472730 -2.566561 0.9632942 -0.7586191
[12,] 1.0088650 -1.636570 0.26238590 -1.1508530 -1.1267360 -0.6808852 -2.601545 0.9632942 -0.5936181
[13,] 1.0678950 -1.693990 0.21393680 -1.1249280 -1.0842760 -0.8137157 -2.197405 0.9632942 -0.5284036
[14,] 1.0678950 -1.686367 0.27836240 -1.1249280 -1.0842760 -0.8633933 -1.996407 1.0133810 -0.4659891
[15,] 1.0589380 -1.686367 0.29051400 -1.1249280 -0.9604404 -0.7426738 -2.320115 0.8948683 -0.6177153
[16,] 0.9536984 -1.747901 0.26642530 -1.2055640 -0.9039858 -0.9782398 -2.215664 1.0357380 -0.6298480
[17,] 0.9361924 -1.600381 0.09382066 -1.0334390 -1.0116370 -0.6259247 -1.949520 0.9669471 -0.7946234
[18,] 1.0613580 -1.628890 0.32013570 -1.0857450 -1.1633470 -0.8062320 -1.944724 0.9669471 -0.6295109
[19,] 1.0408520 -1.834916 0.42266570 -1.0381210 -1.3012910 -0.7483777 -2.001453 0.8119757 -0.7648215
[20,] 1.0408520 -1.533823 0.20656350 -1.1767680 -1.0594860 -1.0057820 -1.945807 0.8949320 -0.7028089
[,39] [,40] [,41] [,42] [,43] [,44] [,45] [,46] [,47]
[1,] 0.384317000 0.007963392 -1.734677 -0.05189428 -0.6663659 -1.782053 -0.3640737 0.447628500 1.6562350
[2,] 0.573446000 -0.188695700 -1.560938 -0.23060750 -0.4034068 -1.796230 -0.3186509 0.436945100 1.5962810
[3,] 0.444107600 0.076939200 -1.636813 -0.11820420 -0.6753803 -2.402139 -0.5781131 0.400756100 1.5601830
[4,] 0.363022400 -0.260919800 -1.900464 -0.12043800 -0.6837200 -2.285158 -0.5055840 0.295678100 1.4219620
[5,] 0.363022400 -0.182438500 -1.612266 -0.11774240 -0.6132213 -2.415184 -0.5038202 0.330291500 1.4219620
[6,] 0.206622300 0.048323030 -1.638584 -0.20254600 -0.6106830 -2.557931 -0.5641900 0.378596900 1.3678900
[7,] 0.213995500 -0.165511600 -1.814017 -0.13770650 -0.6364151 -2.282553 -0.5986615 0.318305300 1.3678900
[8,] 0.231340800 -0.068794150 -2.067627 -0.12001820 -0.5837232 -2.306302 -0.6869133 0.112180600 1.3136330
[9,] 0.177515400 -0.180718000 -1.763305 -0.33562350 -0.7314133 -2.638164 -0.6409333 0.089030710 1.3231490
[10,] 0.177515400 -0.161179700 -1.586537 -0.26005150 -0.7491947 -2.580414 -0.6564046 0.069682940 1.3231490
[11,] -0.004650063 -0.137525400 -1.713459 -0.23105330 -0.7409744 -2.688724 -0.6564046 -0.074417950 1.3231490
[12,] 0.029917380 -0.231979700 -1.811302 -0.23105330 -0.7944916 -2.535066 -0.5992294 0.180521700 1.1468480
[13,] 0.172611700 -0.173306900 -1.677719 -0.27026880 -0.7177729 -2.602495 -0.4317266 0.160669700 1.2265690
[14,] 0.131604900 -0.242258000 -1.976754 -0.19875840 -0.9356538 -2.544541 -0.8248848 0.260270900 1.2067420
[15,] 0.043171470 -0.201555700 -1.956390 -0.49319880 -0.5936061 -2.454039 -0.8808056 0.193407600 1.2638640
[16,] 0.178172800 -0.201555700 -1.806070 -0.30665240 -0.8898050 -2.574118 -0.8695682 0.193407600 1.2833330
[17,] 0.050888310 -0.197644000 -2.037469 -0.44642050 -0.9347796 -2.389860 -0.6839889 0.116680200 1.2833330
[18,] 0.113492300 -0.166430900 -1.786558 -0.44642050 -0.7313230 -2.596947 -0.6528923 0.187336500 1.2318330
[19,] 0.113492300 -0.225357900 -1.942425 -0.37268980 -0.6563107 -2.383797 -0.9576082 0.076817380 1.2411270
[20,] 0.112608900 -0.230070600 -1.684929 -0.21799440 -0.6806913 -2.214749 -0.8788627 0.106103600 1.1702730
[,48] [,49] [,50]
[1,] -3.388326 1.0260770 1.915078
[2,] -3.180799 0.9589677 1.779945
[3,] -3.180799 0.9346070 1.779945
[4,] -3.195031 0.7713324 1.788631
[5,] -2.811244 0.8127999 1.750932
[6,] -2.494217 0.8620186 1.641431
[7,] -2.528345 0.8027208 1.586068
[8,] -2.598460 0.7454984 1.586068
[9,] -2.897914 0.7454984 1.586068
[10,] -2.826271 0.8983194 1.605036
[11,] -2.849651 0.7697966 1.548475
[12,] -2.797681 0.7310058 1.498044
[13,] -2.634745 0.7310058 1.498044
[14,] -2.663821 0.7225162 1.382487
[15,] -3.182244 0.7983458 1.381473
[16,] -3.182244 0.6097289 1.476652
[17,] -3.293649 0.6097289 1.476652
[18,] -3.125621 0.6696709 1.421561
[19,] -2.636697 0.6570127 1.421561
[20,] -2.954512 0.5480306 1.321848
[ reached getOption("max.print") -- omitted 80 rows ]
$alpha_accept
[1] 0.94 0.95 0.91 0.91 0.93 0.77 0.86 0.81 0.94 0.87 0.94 0.89 0.88 0.93 0.86 0.92 0.92 0.91 0.80 0.82 0.94
[22] 0.93 0.98 0.76 0.91 0.91 0.92 0.93 0.80 0.74 0.90 0.89 0.91 0.91 0.95 0.94 0.76 0.85 0.87 0.90 0.92 0.91
[43] 0.90 0.96 0.97 0.91 0.80 0.95 0.82 0.67
$beta
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12]
[1,] 0.8499575 0.6695774 -0.7909273 -0.7683737 0.8032444 0 0 0 0 0 0.00000000 0
[2,] 0.8403646 0.6392943 -0.5703427 -0.9196081 0.8358736 0 0 0 0 0 0.00000000 0
[3,] 0.6686810 0.5608166 -0.5963623 -0.9665158 0.8054401 0 0 0 0 0 0.00000000 0
[4,] 0.4858712 0.5374670 -0.6240182 -0.7124432 0.7918975 0 0 0 0 0 0.00000000 0
[5,] 0.6210771 0.5545324 -0.7018994 -0.8268143 0.7729989 0 0 0 0 0 0.00000000 0
[6,] 0.5549224 0.5433842 -0.5542063 -0.8169709 0.8150294 0 0 0 0 0 0.00000000 0
[7,] 0.8203472 0.4320159 -0.6326700 -0.8001188 0.7507514 0 0 0 0 0 0.00000000 0
[8,] 0.6330988 0.7048131 -0.6916614 -0.7897143 0.7627062 0 0 0 0 0 0.00000000 0
[9,] 0.5651009 0.4924043 -0.6860272 -0.8537561 0.7257137 0 0 0 0 0 0.00000000 0
[10,] 0.4612200 0.8017508 -0.6540078 -1.0305690 0.6273339 0 0 0 0 0 0.00000000 0
[11,] 0.6324391 0.5415515 -0.6513756 -0.9832755 0.6204670 0 0 0 0 0 0.00000000 0
[12,] 0.5839064 0.5415515 -0.6214456 -0.7131989 0.5478639 0 0 0 0 0 0.00000000 0
[13,] 0.5440329 0.7004292 -0.6537521 -0.6915001 0.5032996 0 0 0 0 0 0.00000000 0
[14,] 0.6915420 0.7014379 -0.6640724 -0.5162670 0.5079815 0 0 0 0 0 0.00000000 0
[15,] 0.8401475 0.4662788 -0.6640724 -0.5224059 0.5079815 0 0 0 0 0 0.00000000 0
[16,] 0.7498082 0.8029066 -0.6799667 -0.6250936 0.4403896 0 0 0 0 0 0.00000000 0
[17,] 0.9197503 0.5758149 -0.5924062 -0.8336596 0.5023529 0 0 0 0 0 0.00000000 0
[18,] 0.8169270 0.3699032 -0.4247393 -0.7689715 0.7248978 0 0 0 0 0 0.00000000 0
[19,] 0.6938103 0.4245262 -0.6947541 -0.5442819 0.7155102 0 0 0 0 0 0.00000000 0
[20,] 0.4131674 0.5087606 -0.5721966 -0.6493814 0.5361747 0 0 0 0 0 0.00000000 0
[,13] [,14] [,15] [,16] [,17] [,18] [,19] [,20] [,21] [,22] [,23] [,24]
[1,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[2,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[3,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[4,] 0.000000000 0 0 0 0.0828812 0.0000000 0 0 0.00000000 0 0.0000000 0
[5,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[6,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[7,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[8,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[9,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[10,] 0.000000000 0 0 0 -0.2637127 0.0000000 0 0 0.00000000 0 0.0000000 0
[11,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[12,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[13,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[14,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[15,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[16,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[17,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[18,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[19,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[20,] 0.000000000 0 0 0 0.0000000 0.0000000 0 0 0.00000000 0 0.0000000 0
[,25] [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] [,35]
[1,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[2,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[3,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[4,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[5,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[6,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[7,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[8,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[9,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[10,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[11,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[12,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[13,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[14,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[15,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[16,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[17,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[18,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[19,] 0.00000000 0 0.00000000 0.0000000 0 0 0.00000000 0.00000000 0 0.00000000 0
[20,] 0.00000000 0 0.00000000 0.0000000 0 0 -0.07510908 0.00000000 0 0.00000000 0
[,36] [,37] [,38] [,39] [,40] [,41] [,42] [,43] [,44] [,45] [,46] [,47]
[1,] 0 0 0.00000000 0.0000000 0.00000000 0 0 -0.0440988 0.0000000 0 0.00000000 0
[2,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[3,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[4,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[5,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[6,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[7,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[8,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[9,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[10,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[11,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[12,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[13,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[14,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[15,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[16,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[17,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[18,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[19,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 -0.1100676 0 0.00000000 0
[20,] 0 0 0.00000000 0.0000000 0.00000000 0 0 0.0000000 0.0000000 0 0.00000000 0
[,48] [,49] [,50]
[1,] 0 0 0
[2,] 0 0 0
[3,] 0 0 0
[4,] 0 0 0
[5,] 0 0 0
[6,] 0 0 0
[7,] 0 0 0
[8,] 0 0 0
[9,] 0 0 0
[10,] 0 0 0
[11,] 0 0 0
[12,] 0 0 0
[13,] 0 0 0
[14,] 0 0 0
[15,] 0 0 0
[16,] 0 0 0
[17,] 0 0 0
[18,] 0 0 0
[19,] 0 0 0
[20,] 0 0 0
[ reached getOption("max.print") -- omitted 80 rows ]
$beta_accept
[1] 0.01 0.20 0.01 0.01 0.01 0.06 0.08 0.04 0.05 0.06 0.11 0.03 0.07 0.06 0.06 0.09 0.15 0.09 0.11 0.03 0.06
[22] 0.10 0.08 0.06 0.13 0.05 0.08 0.11 0.03 0.01 0.09 0.07 0.08 0.12 0.01 0.07 0.10 0.07 0.06 0.12 0.08 0.02
[43] 0.06 0.08 0.08 0.12 0.02 0.04 0.05 0.02
$hyperparameters
$hyperparameters$mcmc
GG thin burn proposal_alpha proposal_beta random_seed
1 1100 10 100 0.5 0.5 376075
$hyperparameters$priors
intercept_variance slab_variance bb_alpha bb_beta
1 10 10 0.02 1.98
$hyperparameters$inputdata
$hyperparameters$inputdata$XX
[,1]
[1,] -1.46344784
[2,] 2.03257164
[3,] -0.46247065
[4,] 0.06962129
[5,] -0.79851765
[6,] -0.44228723
[7,] 0.71703403
[8,] 0.15782627
[9,] 0.27826931
[10,] -0.38876926
[11,] -0.33361527
[12,] 0.25123585
[13,] 0.35292801
[14,] 0.72774682
[15,] 0.14401536
[16,] -2.06109494
[17,] 1.35127907
[18,] -0.80326106
[19,] 0.10591133
[20,] 0.91485694
[21,] 0.88760647
[22,] 0.11213618
[23,] -1.17797179
[24,] 1.36586436
[25,] -1.40274128
[26,] -0.61223723
[27,] -1.58730602
[28,] 0.75084769
[29,] -1.35951690
[30,] 0.33845651
[31,] -1.08893521
[32,] 1.06313237
[33,] -1.06802604
[34,] 0.58367201
[35,] 1.63762827
[36,] 0.81502031
[37,] -0.69906415
[38,] 0.19682389
[39,] 1.01010761
[40,] 0.19028162
[41,] -1.75030390
[42,] 0.04610347
[43,] -0.15328986
[44,] 1.31750081
[45,] 0.41809822
[46,] 0.88489075
[47,] 0.07938542
[48,] -0.34494626
[49,] 1.11186857
[50,] 0.14508321
[51,] 0.06015045
[52,] 0.56669084
[53,] 1.34212806
[54,] -0.78611323
[55,] -1.86788687
[56,] 0.20424367
[57,] 0.55158248
[58,] -0.20439619
[59,] -0.99362501
[60,] -2.49266940
[61,] -0.30464771
[62,] -0.18860355
[63,] 1.45515011
[64,] -0.33871514
[65,] -1.91463847
[66,] 0.29729905
[67,] 2.81636815
[68,] -1.12316099
[69,] 0.65395172
[70,] 0.54665374
[71,] -0.35695360
[72,] -0.65888840
[73,] 1.30811388
[74,] -0.09659515
[75,] -0.40531238
[76,] 1.84362623
[77,] -1.54946817
[78,] -1.70540583
[79,] 0.62267720
[80,] -0.14844914
[81,] 0.49106127
[82,] 1.12270356
[83,] -0.95652961
[84,] -0.72398345
[85,] -0.91493719
[86,] -1.82977684
[87,] 1.30341373
[88,] 0.36664428
[89,] -0.81743143
[90,] -0.39123003
[91,] 0.02762621
[92,] 0.46126920
[93,] 1.58513324
[94,] -0.10081579
[95,] 0.46717749
[96,] 0.52632634
[97,] 0.47827309
[98,] 0.10312598
[99,] -0.64668147
[100,] 0.25552395
$hyperparameters$inputdata$YY
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [,15] [,16] [,17] [,18] [,19]
[1,] 0 0 28 120 0 53 0 60 2 79 1 0 2 50 14 3 1 1 96
[2,] 40 12 0 0 88 8 141 106 32 26 0 3 1 33 1 2 0 2 82
[3,] 0 0 0 0 170 51 112 239 3 78 0 5 0 38 31 0 0 1 73
[4,] 0 0 0 0 131 143 41 119 6 16 0 13 1 23 4 0 0 1 141
[5,] 8 0 0 0 268 7 0 14 0 43 0 12 6 41 3 0 0 0 116
[6,] 20 0 4 8 63 142 2 65 2 33 11 3 9 40 3 4 0 1 130
[7,] 24 6 2 0 96 191 0 49 30 102 1 16 5 20 3 6 0 0 131
[8,] 0 0 4 1 101 95 4 12 7 19 0 6 7 31 11 10 0 3 127
[9,] 0 0 7 0 0 79 58 258 68 5 6 4 0 16 14 0 7 1 80
[10,] 3 7 0 0 93 58 15 32 3 63 1 4 8 33 2 6 3 0 153
[11,] 1 0 29 6 3 240 8 51 2 20 1 2 10 6 13 0 9 0 149
[12,] 12 0 0 0 154 173 6 10 0 30 2 15 8 69 14 0 0 0 178
[13,] 1 0 1 0 29 10 76 99 6 42 0 0 13 78 23 0 0 0 175
[14,] 2 0 0 0 113 154 23 64 2 52 0 2 28 51 12 1 0 0 94
[15,] 0 17 76 0 0 126 67 139 5 108 0 9 13 15 4 1 0 1 113
[16,] 0 0 141 3 0 165 0 33 5 16 0 6 2 41 11 0 0 1 94
[17,] 2 15 10 0 38 175 9 55 1 12 3 4 17 42 7 0 5 0 52
[18,] 0 0 3 0 9 397 17 149 3 33 4 6 3 15 5 0 0 0 23
[19,] 1 0 2 19 76 5 0 9 3 25 2 17 0 43 14 14 0 0 73
[20,] 5 3 0 0 124 11 7 40 18 20 0 14 1 121 11 0 0 0 158
[,20] [,21] [,22] [,23] [,24] [,25] [,26] [,27] [,28] [,29] [,30] [,31] [,32] [,33] [,34] [,35] [,36]
[1,] 26 0 11 1 142 11 2 3 3 112 99 0 12 1 5 7 2
[2,] 60 1 2 10 123 0 0 0 0 64 39 0 17 27 0 20 3
[3,] 44 18 10 1 239 5 8 5 0 119 50 2 50 6 0 27 1
[4,] 101 0 60 0 81 0 7 9 1 118 115 0 21 25 4 0 0
[5,] 59 0 4 0 77 0 13 0 0 56 128 0 11 1 3 3 13
[6,] 63 0 33 0 137 0 8 0 13 197 88 0 93 0 16 2 15
[7,] 65 0 19 17 98 0 3 1 0 166 150 2 16 1 0 40 1
[8,] 59 1 5 5 41 0 14 6 0 73 128 1 7 1 36 4 1
[9,] 57 3 10 4 38 4 11 2 0 29 34 0 32 13 1 5 0
[10,] 29 0 20 1 45 0 9 0 0 51 56 0 25 3 5 1 0
[11,] 15 0 50 0 79 1 0 10 0 111 76 2 9 4 0 4 1
[12,] 48 0 13 4 80 0 6 16 0 87 91 0 35 71 2 11 1
[13,] 53 9 16 0 123 3 1 0 0 59 121 0 49 1 0 0 0
[14,] 63 0 3 0 110 1 2 0 0 21 42 0 35 1 2 2 0
[15,] 14 3 44 1 35 0 6 4 0 125 72 3 15 9 0 0 0
[16,] 54 1 17 9 81 1 0 0 0 150 19 0 14 0 6 9 0
[17,] 38 0 7 0 58 2 17 2 0 41 48 2 20 0 4 28 0
[18,] 38 0 5 0 19 4 2 0 0 53 31 0 27 0 2 41 0
[19,] 27 2 46 0 71 0 5 5 0 105 59 3 55 4 5 18 0
[20,] 66 0 1 0 83 0 8 8 0 54 93 2 86 26 1 8 0
[,37] [,38] [,39] [,40] [,41] [,42] [,43] [,44] [,45] [,46] [,47] [,48] [,49] [,50]
[1,] 156 0 41 21 0 35 26 40 15 9 88 0 87 158
[2,] 74 18 1 10 0 2 4 0 6 15 54 0 25 89
[3,] 50 56 105 5 3 12 1 0 4 40 107 0 100 60
[4,] 30 4 60 5 2 10 25 0 8 35 104 0 24 81
[5,] 67 0 34 47 0 13 4 0 24 7 85 0 18 108
[6,] 50 39 8 5 8 6 2 2 5 58 69 0 86 215
[7,] 29 29 12 20 0 32 1 1 6 6 61 0 94 221
[8,] 40 1 17 11 1 18 17 4 7 7 40 0 33 51
[9,] 35 7 32 17 0 8 6 0 0 22 72 0 44 54
[10,] 67 61 70 12 3 12 5 0 26 15 65 0 28 60
[11,] 45 4 28 13 6 2 0 0 9 20 159 0 25 238
[12,] 68 20 33 22 0 2 8 15 2 29 99 0 67 123
[13,] 102 16 30 5 0 28 13 0 8 25 91 1 52 147
[14,] 46 0 27 16 0 14 28 0 13 33 47 0 36 58
[15,] 116 0 48 15 0 3 1 0 4 18 129 0 24 149
[16,] 25 29 10 7 0 15 2 0 5 5 66 0 46 145
[17,] 23 15 5 19 12 41 0 0 8 27 88 0 31 43
[18,] 16 17 22 25 0 7 7 0 10 42 23 0 18 60
[19,] 47 6 2 6 11 42 19 0 0 63 131 0 11 102
[20,] 93 8 10 31 17 6 18 0 31 64 152 0 17 110
[ reached getOption("max.print") -- omitted 80 rows ]
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