Comments (1)
Thanks for reporting this. The issue seems to be how your sequence editor reads the file and displays the features.
This works for me:
import dnacauldron as dc
from Bio import SeqRecord, Seq, SeqFeature
record = SeqRecord.SeqRecord(Seq.Seq("AGATCGATCGATGTAGCT"))
dc.biotools.record_operations.annotate_record(record, test=1234, number="test123")
dc.biotools.write_record(record, target="output.gb")
output.gb
:
LOCUS . 18 bp DNA UNK 01-JAN-1980
DEFINITION .
ACCESSION <unknown id>
VERSION <unknown id>
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
misc_feature 1..18
/test=1234
/number=test123
ORIGIN
1 agatcgatcg atgtagct
//
As you see the qualifier is correct in the file, but /test is displayed under /note in an editor, SnapGene for example.
from dnacauldron.
Related Issues (14)
- Check parts assembling into enzyme sites
- pdf_reports required but not installed by pip HOT 1
- The tutorial uses parts as keyword argument for SequenceRepository but now its collections as dict of dict HOT 1
- Purpose of OligoPairAnnealing class (oligo_annealing method in assembly plan) HOT 2
- Assembling fragments digested by different enzymes HOT 5
- Test fails with Biopython v1.79 HOT 1
- example with ladders HOT 1
- TypeError: StickyEndSeq.reverse_complement() got an unexpected keyword argument 'inplace' HOT 1
- problem with snapgene_reader HOT 3
- Unwanted case-sensitivity when indexing fragment against source record HOT 2
- Linear assemblies? HOT 3
- annotations crossing overhangs lost HOT 7
- Choosing enzyme in AssemblyPlan.from_spreadsheet()
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