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bowtie2

A fast and sensitive gapped read aligner

canu

A single molecule sequence assembler for genomes large and small.

cartopy

Cartopy - a cartographic python library with matplotlib support

cellmaptracer

A user-friendly tracking system for long-term migratory and proliferating cells

central-dogma

A simple web application for teaching students about transcription and translation of DNA into RNA into protein.

cg

computational geometry notes

cheatsheets

Official Matplotlib cheat sheets

cmasher

Scientific colormaps for making accessible, informative and 'cmashing' plots

copycat

Copycat is a simple script to capture and bin the read coverage across a genome from a bam file of read alignments. It relies on bedtools to get coverage for each individual nucleotide in the genome using bedtools genomecov, then bins and organizes these coverage values into 10kb bins and outputs the coverage information in a .csv format (for upload to SplitThreader) and in a .seg format (for viewing the copy number profile in IGV)

cord19

Get started with CORD-19

coronabar

🦠 A menu bar app to track coronavirus cases all over the world

coronatab

Free & Open source platform for COVID19 data. Dashboard - REST API - Browser Extension - Localised 🦠 😷

coronavirus-tracker

🦠 A live tracker and visualization of the coronavirus (2019-nCoV). Consists purely of a frontend written in EmberJS.

coronavirus-tracker-api

🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!

covid

Python package to fetch information regarding the novel corona virus provided by Johns Hopkins university and worldometers.info

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

covid-19-data

An ongoing repository of data on coronavirus cases and deaths in the U.S.

covid-19-data-1

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

covid-19a

A short script for plotting COVID-19 case number trend lines and bar charts

covid-tracking

urlwatch configuration to monitor state COVID-19 data

covid-tracking-data

covid-vaccine-spotter

covid19

A worldwide epidemiological database for COVID-19 at fine-grained spatial resolution

covid19-sg

GNUplot Jupyter notebook

covid19-test

covid19_inference_forecast

covid_vaccine_analysis

covidmap

Generates a choropleth map and a heat map using folium .Live data is accessed from "COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University" using an API from COVID19 API developed by Kyle Redelinghuys.

cpython

The Python programming language

cramtools

CRAM format specification and java API for read data.