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gemini

a lightweight db framework for exploring genetic variation.

generating-and-designing-dna

Code for the paper "Generating and designing DNA with deep generative models" (arXiv:1712.06148)

genomics-bioinformatics-rosalind-

problems list

geometry-score

geoopt

Riemannian Adaptive Optimization Methods with pytorch optim

gifsicle

Create, manipulate, and optimize GIF images and animations

glimmer-mg

Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering

gmpy

General Multi-Precision arithmetic for Python 2.6+/3+ (GMP, MPIR, MPFR, MPC)

gudhi-devel

The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.

hex-stickers

RStudio hex stickers

hough_transform

Hough Transform implementation in Python

hough_transform-1

A case study: line and circle detection technique using hough transform

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htslib

C library for high-throughput sequencing data formats

hyperbolic-image-embeddings

Supplementary code for the paper "Hyperbolic Image Embeddings".

identify-and-localize-covid-19-abnormalities-on-chest-radiographs

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

imageio

Python library for reading and writing image data

inphared

Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.

introducing-python

An introduction to Python

ipycanvas

Interactive Canvas in Jupyter

ipygany

3-D Scientific Visualization in the Jupyter Notebook

ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

iq-tree

Efficient phylogenomic software by maximum likelihood

iqmol3

IQmol version 3

ironpython3

DO NOT USE. Implementation of Python 3.x for .NET Framework that is built on top of the Dynamic Language Runtime.

jbrowse-jupyter

A python package for showing JBrowse views

jellyfish

A fast multi-threaded k-mer counter

jnomics

Cloud Scale Genomic Analysis Framework for Hadoop

jwas.jl

Julia for Whole-genome Analysis Software