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Material for Oliva et al.'s article on ancestral sequence reconstruction
ancestral's Introduction
Scripts and functions to simulate data and analyse results as presented in Oliva et al. 2019 Bioinformatics article.
create_tree.R
: R functions to generate ultrametric trees.
scripts.py
: Python functions to simulate sequences along the simulated trees.
ancestral_analysis.R
: R functions to process simulation output.
script.md
: series of R commands that were used to generate the results.
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