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Material for Oliva et al.'s article on ancestral sequence reconstruction

R 31.44% Python 68.56%

ancestral's Introduction

Scripts and functions to simulate data and analyse results as presented in Oliva et al. 2019 Bioinformatics article.

  • create_tree.R: R functions to generate ultrametric trees.
  • scripts.py: Python functions to simulate sequences along the simulated trees.
  • ancestral_analysis.R: R functions to process simulation output.
  • script.md: series of R commands that were used to generate the results.

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