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enformatik's Projects

3t

Tiered Tensor Transform (3T) multi-scale protein-ligand complex pocket structure generation & drug screening

6s083

Materials for MIT 6.S083 / 18.S190: Computational thinking with Julia + application to the COVID-19 pandemic

adsm

A simulation of disease spread in livestock populations. Includes detection and containment simulation.

alignment_sandbox

Allows users to play with alignments and mess with the scoring matrix.

analyzing_github_popularity

Diving into Popularity of GitHub Repositories

ancestral

Material for Oliva et al.'s article on ancestral sequence reconstruction

annotated_deep_learning_paper_implementations

🧑‍🏫 50! Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

api

API for Current cases and more stuff about COVID-19 or the Novel Coronavirus Strain

api-client-android

A sample Android app that calls the Google Genomics API.

aspell-python

Python wrapper for aspell (C extension and python version)

assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

baboumath

This is a library for Matrix analysis accelerated by Numba, very useful for Data mining and Deep learning.

babylon.js

Babylon.js: a complete JavaScript framework for building 3D games with HTML 5 and WebGL

bagdes

svg badges displaying cases, deaths, and 24h changes

basset

Convolutional neural network analysis for predicting DNA sequence activity.

bayesynergy

An R package for Bayesian semi-parametric modelling of in-vitro drug combination experiments

bazel

a fast, scalable, multi-language and extensible build system

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

beam

RNA secondary structure motif discovery

bedtools2

A powerful toolset for genome arithmetic.

beeswarm

Honeypot deployment made easy

beeswarm-1

An R package implementing bee swarm plots

benchmarking-tools

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

biocaml

OCaml Bioinformatics Library

bioconda-utils

Utilities for building and managing bioconda recipes

biomedical-informatics-books

"Cybermedicine: Computer, internet, network, wired-wireless communications, mechanics, electronics, robotics, data processing and evaluation of technology and software all at the same time or partially human and other living things in the diagnosis, treatment and follow-up is involved in a disciplinary branch." ― Mehmet Keçeci

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