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data-canvas

Improved event handling and testing for the HTML5 canvas

dataproc

Simple python script for running a Spark job on an ephemeral Google Cloud dataproc cluster

discohorts

Generate Cohorts based on Epidisco and/or Biokepi results

epidisco

Personalized cancer epitope discovery and peptide vaccine prediction pipeline

epidisco-web

Web interface to easily describe and submit epidisco jobs

filter-bam

Stand-alone utility for filtering a BAM file to specific genomic regions, using Apache Spark.

flowdec

TensorFlow Deconvolution for Microscopy Data

flowrepository-metadata-db

flusso

FCS (Flow Cytometry Standard) parser and utility

gdc-helpers

Utilities and tricks to help efficiently download data from GDC (Genomics Data Commons)

genomic-loci

Utilities for representing genomic loci and reference-genomes

genomic-reads

Library for representing and working with genomic-sequencing reads.

genomic-readsets

Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.

genomic-reference

Utilities for representing and working with reference genomes

genomic-utils

Utilities for working with genomic bases, cigar strings, and phred scores.

genspio

Generate Shell Phrases In OCaml

grafana-spark-dashboards

Scripts for generating Grafana dashboards for monitoring Spark jobs

guacamole

Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly

hadoop-bam

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

hlarp

Normalize HLA typing output.

icfp2017-papers

Link to preprints for ICFP'17 and colocated events

idiogrammatik

An extensible, embeddable karyogram for the browser.

igv-httpfs

An adaptor which lets IGV talk to HDFS via HttpFS

igvxml

Create IGV session files from the command-line

immune-infiltrate-explorations

immuno

Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)

immuno_research

Predicting immunogenicity of short peptides

imseq

IMSEQ - IMmunogenetic SEQuence Analysis

inferelator_ng

Inferelator refactor and generalization.

infiltrate-rnaseq-pipeline