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survivalstan

Library of Stan Models for Survival Analysis

t-cell-activation

Modeling bead based T cell activation to optimize ex vivo culturing conditions

t-cell-data

t-cell-electroporation

Code/Data repository for "Electroporation characteristics of human primary T cells"

t-cell-guide

Human Primary T cells: A Practical Guide

t-cell-relation-extraction

Literature mining for T cell relations

tcga-blca

Example analysis using Cohorts & TCGA-BLCA data

tcr-transfer

Explore an alternative way to clone TILs by first single-cell TCR-seq'ing them and then transforming non-exhausted T cells with these TIL TCRs

test-utils

Unit-testing utilities

topeology

Compare neoepitope sequences with epitopes from IEDB

vaf-experiments

A step-by-step guide to estimate tumor clonality/purity from variant allele frequency data

variant-calling-benchmarks

Automated and curated variant calling benchmarks for Guacamole

vcf-annotate-polyphen

A tool to annotate human VCF files with PolyPhen2 effect measures

vcf.js

A VCF parser and variant record model in JavaScript.

wobidisco

Workflows Bioinformatics and Discoballs: The Biokepiverse

yarn-logs-helpers

Scripts for parsing / making sense of yarn logs