Comments (1)
Hi,
thanks for your interest in nextNEOpi.
I'm sorry that you ran into troubles, but according to your error log it seems that your machine is running out of memory:
slurmstepd: error: *** JOB 16525322 ON hpc3-20-22 CANCELLED AT 2022-10-21T18:55:47 *** slurmstepd: error: Detected 2 oom-kill event(s) in StepId=16525322.batch. Some of your processes may have been killed by the cgroup out-of-memory handler.
You might need or tell SLURM to reserve more memory.
Or you can also try to request more memory by setting a global 'memory' option in nextNEOpi conf/process.config
(right after the cpus line).
Line 9 in aac260d
memory = '64 GB'
or you can do this as per process option in conf/process.config:
E.g.
Line 28 in aac260d
withName:make_uBAM {
beforeScript = "ulimit -n 4096"
memory = "64 GB"
}
from nextneopi.
Related Issues (20)
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from nextneopi.