Comments (3)
Thanks for your interest in nextNEOpi.
Can you post the .nextflow.log
file?
from nextneopi.
Thank you for the quick response.
I just saw the log file and it might have been because of the python load error, I fixed the error and will keep you updated after the second run.
Here is the error:
Downloading nextflow dependencies. It may require a few seconds, please wait .. �[K�[33mNOTE: Nextflow is not tested with Java 1.8.0_292 -- It's recommended the use of version 11 up to 18 �(B�[m Downloading nextflow dependencies. It may require a few seconds, please wait .. �[KError: A JNI error has occurred, please check your installation and try again Exception in thread "main" java.lang.UnsupportedClassVersionError: org/eclipse/jgit/api/errors/GitAPIException has been compiled by a more recent version of the Java Runtime (class file version 55.0), this version of the Java Runtime only recognizes class file versions up to 52.0 at java.lang.ClassLoader.defineClass1(Native Method) at java.lang.ClassLoader.defineClass(ClassLoader.java:756) at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142) at java.net.URLClassLoader.defineClass(URLClassLoader.java:468) at java.net.URLClassLoader.access$100(URLClassLoader.java:74) at java.net.URLClassLoader$1.run(URLClassLoader.java:369) at java.net.URLClassLoader$1.run(URLClassLoader.java:363) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:362) at java.lang.ClassLoader.loadClass(ClassLoader.java:418) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:352) at java.lang.ClassLoader.loadClass(ClassLoader.java:351) at java.lang.Class.getDeclaredMethods0(Native Method) at java.lang.Class.privateGetDeclaredMethods(Class.java:2701) at java.lang.Class.privateGetMethodRecursive(Class.java:3048) at java.lang.Class.getMethod0(Class.java:3018) at java.lang.Class.getMethod(Class.java:1784) at sun.launcher.LauncherHelper.validateMainClass(LauncherHelper.java:650) at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:632) Loading python/cpu/2.7.15 ERROR: python/cpu/2.7.15 cannot be loaded due to a conflict. HINT: Might try "module unload miniconda3/gpu/4.9.2" first. Loading manta/1.6.0 ERROR: Load of requirement 'python/cpu/2.7.15' failed
from nextneopi.
Issue solved. It was the python error I mentioned. Thank you for the work you for the pipline and the you have done!
from nextneopi.
Related Issues (20)
- Error executing process > 'mixMHC2pred HOT 4
- immunogenicity_scoring HOT 1
- Yara DNA vs RNA DBs HOT 1
- Error executing process HOT 4
- Fail to run pipeline in SLURM HOT 4
- Patch HOT 1
- Filelock safeguard error when run mixcr HOT 10
- Slow process in get_vhla step HOT 3
- nextNEOpi fails HOT 1
- 1
- Problem with CNNScoreVariants HOT 5
- Output file discriptions HOT 6
- Error executing process > 'make_uBAM (sample1 : normal_DNA)' HOT 2
- Error Unknown method HOT 12
- Error at install_IEDB process HOT 12
- Error executing process with NeoFuse HOT 51
- how to install all required tools? HOT 16
- Error executing process > 'installVEPcache (installVEPcache)' HOT 6
- Path to MixCR is incorrect HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from nextneopi.