kasperskytte / bonito

A PyTorch Basecaller for Oxford Nanopore Reads

Hi there 👋

🇩🇰 My name is Kasper, I enjoy:

• 👉 the level 2 dad-life 🚸 as an HPC admin 💻
• 👉 data science of all sorts!
• 👉 bioinformatics and DNA sequencing 🧬
• 👉 Machine learning and (bio)statistics
• 👉 Linux 🐧 system administration and Ansible
• 👉 building R packages 📦 and scripts
• 👉 bundling anything into docker/singularity containers 🛳️
• 👉 building a Shiny app or two, tiny or huge
  • for monitoring the fermentation of your homebrewed beer 🍺
    • https://github.com/KasperSkytte/KaspbeeryPi/
  • or analyzing 🔬 complex microbial communities 🦠, simply:
    • https://dnasense.com/app
    • https://madsalbertsen.github.io/ampvis2/#shiny
    • https://polardnaexplorer.awi.de/
• 👉 Self-hosting! I love tinkering with open source software, virtual machines, containers.
• 👉 Investing and finance, building trading robots! 💰