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2015_gbs-insert-sizes

2015_kwip-96rice-00-normalisation

2015_kwip-samplesum

Debugging the samplesum mismatches

2016-3krice-metadata

2016-bodega-gbs

Course for the Third Week

2016-gbs-re-site

GBS RE detection

2016_1001-genomes

Analysis of 1kgenomes

2016_pip-brachy-vc

2017_cichilid-kwip-mash

Malinsky et al.

2018-robyn-shaw-acacia

2020-04-28_shell-genomics-projmgmt

2020_hpa-geogenet

2020_snakemake-workshop

acanthophis

A comprehensive, opinionated plant variant calling pipeline in Snakemake

ad-libs

local ancestry inference tool for low-coverage resequencing data

adapterremoval

AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

agat

Another Gtf/Gff Analysis Toolkit

analyses

IPython notebooks for various projects

angstrom

Low coverage WGS data analysis package

ansible-jupyterhub

Ansible role to setup jupyterhub server

ansible-modules-core

Ansible modules - these modules ship with ansible

ansible-role-nginx

Ansible Role - Nginx

ansible-role-postfix

Ansible role for Postfix MTA

apprentice-coder

Musings for us rookie coders that sometimes forget where the terminal is

arc

Assembly by Reduced Complexity (ARC)

ardulapse

attachment-downloader

Simple tool for downloading email attachments for all emails in a given folder using an IMAP client

augustus

Genome annotation with AUGUSTUS

axe

Rapid competitive read demulitplexer. Made with tries.

axe-experiments

Experiments showing the utility of Axe