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makro-stacking-rail

markdown-lightbox2

extension for python markdown to lightbox images

markdown-preview-plus

Markdown Preview + Community Features

mash

Fast genome and metagenome distance estimation using MinHash

mhvdb2

Replacement for MHVDB. Needs a better name.

mighty-morphin-fasta-files

Paper and source for AB3ACBS 2016 presentation: Mighty Morphin FASTA Files

minion_qc

Quality control for MinION sequencing data

mitobim

MITObim - mitochondrial baiting and iterative mapping

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targetted sequencing

mpg

Markovian sequence generator

ms-ld

Example LD simulation with recombination using ms and libsequence.

msprime-feedstock

A conda-smithy repository for msprime.

multiparthandler

Updated version of MultipartPostHandler

nbstripout

strip output from Jupyter and IPython notebooks

nextgenmap

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.

nvim-r

Vim plugin to work with R

nvtk

Tools for managing natural variation collections

omnidopsis

Align all the Arabidopsis!

onlign

Online alignment prototypes for ANU improvements to AUGUR

ooni-pipeline

This is the ooni pipeline for doing data analytics on the collected reports

ooni-probe

github copy of OONI-probe https://gitweb.torproject.org/ooni-probe.git

ouroborusco

Iterative extraction of busco loci from short read datasets for phylo purposes

pairs

An extension of @vsbuffalo's pairs

pale-ale

My homebrew tap. Mostly bioinformatics

pandoc-crossref

Pandoc filter for cross-references

pandoc-notes

Take notes using vim, pandoc, xetex and vim-pandoc

pandoc-templates

Templates for pandoc

pandora

Pan-genome inference and genotyping with long noisy or short accurate reads

paneuc-acanthophis

Analysis of ~1000 eucalyputs genomes with the acanthophis pipeline

paneucalyptpostanalysis