kingrc15 / torchmimic Goto Github PK

Sorry
When I tried to install torchmimic on python==3.8, this error came out:
ERROR: Could not install packages due to an OSError: [Errno 22] Invalid argument: '.......\\torchmimic\\data\\normalizers\\decomp_ts0.8.input_str:previous.n1e5.start_time:zero.normalizer'
How could I deal with it?

jupyter notebook shows "Dead kernel" while loading decomposition 'train_listfile.csv' and LOS 'train_listfile.csv'. Jupyter notebook shows the message "The kernel appears to have died. It will restart automatically."

When I try this code I get an error that a file listfile.csv is not found. It doesn't seem to be with the mimic data available from physionet. What should this file be?

root_dir = "/data/mimic-iii-clinical-database-1.4/"
training_dataset = LOSDataset(root_dir, train=True)

FileNotFoundError: [Errno 2] No such file or directory: '/data/mimic-iii-clinical-database-1.4/train_listfile.csv'

Hey, I just tried to load one of the datasets and I get this error when just running from torchmimic.data import LOSDataset

The version installed is '0.2'

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
Cell In [4], line 1
----> 1 from torchmimic.data import LOSDataset

File ~/.pyenv/versions/3.9.13/lib/python3.9/site-packages/torchmimic/data/__init__.py:1
----> 1 from .decompensation.dataset import DecompensationDataset
      2 from .ihm.dataset import IHMDataset
      3 from .los.dataset import LOSDataset

ModuleNotFoundError: No module named 'torchmimic.data.decompensation'