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The multivariate MArginal ePIstasis Test

Home Page: https://lcrawlab.github.io/mvMAPIT/

License: GNU General Public License v3.0

R 53.77% Shell 0.28% C++ 44.72% C 0.51% Dockerfile 0.72%
epistasis mapit mvmapit r variance-components cpp cran epistasis-analysis gwas gwas-tools

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mvmapit's Issues

pleiotropic_set step fails if there are too little pleiotropic SNPs

In simulate_data.R, line 130:

if there are only two pleiotropic snps given the parameter n_pleiotropic = 2 , it causes the error: Error in { : task 1 failed - "incorrect number of dimensions"

Potential solution: in line 127-128:
X_pleio_group1 <- X[, pleio_split$group1, drop = False]
X_pleio_group2 <- X[, pleio_split$group2, drop = False]
which make X_pleio_group1 and X_pleio_group2 to be matrix form instead of vector

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