Topic: gwas Goto Github
Some thing interesting about gwas
Some thing interesting about gwas
gwas,An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of summary statistics from the IEU GWAS database.
User: acdbio
gwas,Pan-genome wide association studies
User: admiralenola
gwas,machine learning for genomic variants
Organization: aehrc
Home Page: http://bioinformatics.csiro.au/variantspark
gwas,kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
User: akcorut
Home Page: https://github.com/akcorut/kGWASflow/wiki
gwas,Rapid standardisation and quality control of GWAS or QTL summary statistics
User: al-murphy
Home Page: https://doi.org/doi:10.18129/B9.bioc.MungeSumstats
gwas,LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
Organization: bgi-shenzhen
gwas,LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
User: boxiangliu
gwas,Cell type specific enrichments using finemapped variants and quantitative epigenetic data
User: caleblareau
Home Page: https://caleblareau.github.io/gchromVAR/
gwas,A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
User: choishingwan
Home Page: http://prsice.info
gwas,GWAS Tutorial for Beginners
User: cloufield
Home Page: https://cloufield.github.io/GWASTutorial/
gwas,Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
Organization: genepi
Home Page: https://imputationserver.sph.umich.edu/
gwas,A nextflow pipeline to perform state-of-the-art genome-wide association studies.
Organization: genepi
Home Page: https://genepi.github.io/nf-gwas
gwas,GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
Organization: gorpipe
gwas,Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions
Organization: grimmlab
Home Page: https://doi.org/10.1093/bioinformatics/btac455
gwas,the hierfstat package
User: jgx65
gwas,Codebook from my GWAS cookbook
User: jonicoleman
gwas,Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
User: jonjala
gwas,GWAS summary statistics files QC tool
User: kukuster
Home Page: https://doi.org/10.1186/s12859-022-04920-7
gwas,R front-end for TASSEL
Organization: maize-genetics
Home Page: https://rtassel.maizegenetics.net
gwas,Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
Organization: mancusolab
gwas,A comprehensive tutorial about GWAS and PRS
User: mareesat
gwas,Single-cell disease relevance score (scDRS)
User: martinjzhang
Home Page: https://martinjzhang.github.io/scDRS/
gwas,SEER, reimplemented in python 🐍🔮
User: mgalardini
Home Page: http://pyseer.readthedocs.io
gwas,🧬High-performance genetics- and genomics-related data visualization using Makie.jl
User: mmkim1210
Home Page: https://mmkim1210.github.io/GeneticsMakie.jl/dev/
gwas,Convert GWAS summary statistics to VCF
Organization: mrcieu
gwas,This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
Organization: neurogenetics
gwas,Find causal cell-types underlying complex trait genetics
Organization: neurogenomics
Home Page: https://neurogenomics.github.io/MAGMA_Celltyping
gwas,PolyFun (POLYgenic FUNctionally-informed fine-mapping)
User: omerwe
gwas,Open Targets python framework for post-GWAS analysis
Organization: opentargets
Home Page: https://opentargets.github.io/gentropy/
gwas,Causal Mixture Model for GWAS summary statistics
Organization: precimed
gwas,An open-source toolkit for large-scale genomic analysis
Organization: projectglow
Home Page: https://projectglow.io
gwas,Quantitative Trait Cluster Association Test in R
Organization: qtcat
gwas,Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Organization: rajlabmssm
Home Page: https://rajlabmssm.github.io/echolocatoR
gwas,Scalable genetics toolkit
Organization: sgkit-dev
Home Page: https://sgkit-dev.github.io/sgkit
gwas,A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
User: shujiahuang
gwas,:bar_chart: Identify cell types and pathways affected by genetic risk loci.
User: slowkow
Home Page: http://www.broadinstitute.org/mpg/snpsea/
gwas,A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
Organization: statgen
Home Page: https://statgen.github.io/locuszoom/
gwas,An R package for creating Q-Q and manhattan plots from GWAS results
User: stephenturner
Home Page: http://cran.r-project.org/web/packages/qqman/
gwas,Efficient variant-call data storage and retrieval library using the TileDB storage library.
Organization: tiledb-inc
Home Page: https://tiledb-inc.github.io/TileDB-VCF/
gwas,Mixed models @lme4 + custom covariances + parameter constraints
User: variani
gwas,A haplotype analysis toolkit for natural variation study.
User: xukaili
gwas,Rare variant test software for next generation sequencing data
User: zhanxw
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