Topic: wdl Goto Github
Some thing interesting about wdl
Some thing interesting about wdl
wdl, Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Organization: 4dn-dcic
wdl,Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
Organization: aclimatise
Home Page: https://aclimatise.github.io/CliHelpParser/
wdl,A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/germline-DNA/
wdl,A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/RNA-seq/
wdl,A pipeline for somatic variantcalling. Category:Single-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/somatic-variantcalling/
wdl,A collection of reusable WDL tasks. Category:Other
Organization: biowdl
Home Page: https://biowdl.github.io/tasks/
wdl,Automatic Input Documentation for WDL workflows
Organization: biowdl
Home Page: https://wdl-aid.readthedocs.io
wdl,CLI for interacting with Cromwell servers
Organization: broadinstitute
wdl,Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Organization: broadinstitute
Home Page: http://cromwell.readthedocs.io/
wdl,Broad fungal method repository
Organization: broadinstitute
wdl,Long read production pipelines
Organization: broadinstitute
Home Page: https://broadinstitute.github.io/long-read-pipelines/
wdl,Rich IDE support for Workflow Description Language
Organization: broadinstitute
wdl,A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
Organization: broadinstitute
wdl,Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.
Organization: cdphe-bioinformatics
Home Page: https://cdphe-bioinformatics.github.io/CDPHE-SARS-CoV-2/
wdl,📦 Package manager for REAPER
User: cfillion
Home Page: https://reapack.com
wdl,Workflow Description Language developer tools & local runner
Organization: chanzuckerberg
wdl,SFN-WDL infrastructure for pipeline execution - a template repository and Terraform module for SFN-WDL based projects
Organization: chanzuckerberg
wdl,WDL tasks for commonly used BFX tools
Organization: chopdgd
wdl,A translator from WDL to CWL v1.2
Organization: common-workflow-lab
wdl,[Experimental] Workflow Definition Language (WDL) to CWL
Organization: common-workflow-lab
Home Page: https://github.com/common-workflow-lab/wdl-cwl-translator
wdl,A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.
User: cristianetaniguti
wdl,A project to download 2b2t's map (WIP)
User: damatrix
Home Page: https://daporkchop.net/
wdl,Project for 5th Semester Subject -> WDL & DBMS
User: danishsshaikh
wdl,Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.
Organization: databiosphere
wdl,A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Organization: databiosphere
Home Page: http://toil.ucsc-cgl.org/.
wdl,Workflow Description Language compiler for the DNAnexus platform
Organization: dnanexus
wdl,An app store for scientific workflows, tools, notebooks, and services
Organization: dockstore
Home Page: https://dockstore.org/
wdl,Website user interface for Dockstore in Angular2
Organization: dockstore
Home Page: https://dockstore.org
wdl,A repo containing instructions for running a Cromwell server on Gizmo at the Fred Hutch. (Contact Amy Paguirigan for questions)
Organization: fredhutch
wdl,Configure workflow/pipeline tests using yaml files.
Organization: lumc
Home Page: https://pytest-workflow.readthedocs.io/en/stable/
wdl,MobidicWDL workflows
Organization: mobidic
wdl,bioinformatics pipelines
Organization: my-rna-health
wdl,Workflow Description Language - Specification and Implementations
Organization: openwdl
Home Page: https://www.openwdl.org/
wdl,Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
User: otiai10
Home Page: https://hotsub.github.io/
wdl,[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
Organization: pmcc-bioinformaticscore
Home Page: https://janis.readthedocs.io/
wdl,A package manager for Workflow Description Language files.
Organization: stjude-rust-labs
Home Page: https://stjude-rust-labs.github.io/sprocket/
wdl,Rust crates for working with Workflow Description Language (WDL) documents.
Organization: stjude-rust-labs
wdl,An opinionated Cromwell orchestration manager.
Organization: stjudecloud
Home Page: https://stjudecloud.github.io/oliver
wdl,Create WDL documentation using Markdown.
Organization: stjudecloud
wdl,Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Organization: stjudecloud
wdl,WDL (Workflow Description Language) major mode
User: zhanxw
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