Topic: haplotypes Goto Github
Some thing interesting about haplotypes
Some thing interesting about haplotypes
haplotypes,A Novel Computational Method Based on Genetic Algorithms for Haplotype Assembly
User: andrea-tango
haplotypes,Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
Organization: cbg-ethz
haplotypes,This program leverages zero recombination clusters and their relative positions on a linkage group to impute phases for missing data with high fidelity.
User: cnuge
haplotypes,A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.
User: cristianetaniguti
haplotypes,Intersect multiple VCF files with haplotype awareness
User: dancooke
haplotypes,Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
User: edgardomortiz
haplotypes,A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.
User: everestial
haplotypes,a python program to stitch the ReadBack phased haplotypes in F1 hybrids.
User: everestial
haplotypes,A pipeline for phasing haploptypes using short readbackphased haplotype blocks in population of samples.
User: everestial
haplotypes,Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.
User: everestial
haplotypes,This is a tutorial that shows how phaseExtender can be used for recursive improvement of haplotype phasing and how to test the phasing quality by measuring switcherrors.
User: everestial
haplotypes,A python parser to simplify and build the VCF (Variant Call Format).
User: everestial
haplotypes,Fast and simple haplotype counting.
User: gabrielkg
haplotypes,ClairS - a deep-learning method for long-read somatic small variant calling
Organization: hku-bal
haplotypes,This repository contains the files from my master thesis project required to conduct a whole-genome analysis of haploblocks in wheat based on pairwise comparisons between assemblies. This is based on a previous method (https://doi.org/10.1038/s42003-020-01413-2), but focuses on the the quality of the pairwise comparisons to call haplotypes.
User: jamonterotena
haplotypes,The bash script reformats SHAPEIT .haps file to show samples by rows instead of variants by rows
User: jamonterotena
haplotypes,SNP pipeline using Snakemake for the Weisrock Lab's Tiger Salamander project.
User: kelly-sovacool
Home Page: https://doi.org/10.1073/pnas.2014719118
haplotypes,A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
User: lankycyril
Home Page: https://www.biorxiv.org/content/10.1101/2020.01.31.929307v1
haplotypes,Kernelized HAplotype-based MIXed model association mapping (KHAMIX)
User: ljacquin
haplotypes,Split a BAM file by haplotype support
Organization: luntergroup
haplotypes,Bayesian haplotype-based mutation calling
Organization: luntergroup
haplotypes,Minor Variant Calling and Phasing Tools
Organization: pacificbiosciences
haplotypes,Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Organization: plantandfoodresearch
haplotypes,Haplotype inheritance filtering of genetic variation
Organization: platinum-pedigree-consortium
haplotypes,Proteogenomics database-generation tool for protein haplotypes and variants
Organization: progenno
haplotypes,Haplotype RecOnstruction using Longitudinal sequencing Data
Organization: richardagoldstein
Home Page: https://doi.org/10.1101/444877
haplotypes,Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)
User: rwk-unil
haplotypes,An algorithm for recovering haplotypes from metagenomes
User: samstudio8
Home Page: https://gretel.readthedocs.io/en/latest/
haplotypes,A Reliable and Fast Algorithm for Single Individual Haplotyping
User: shujiahuang
haplotypes,a C++ program for haplotype reconstruction using HMM
User: styvon
haplotypes,Haplo- and Diplotype Star Allele matcher for Drug Dosage Guidelines
User: tbrunetti
haplotypes,An efficient genetic data imputation pipeline
Organization: transbiozi
haplotypes,Create a set of reference-guided multiple-aligned haplotypes or founder sequences from a variant call file and a reference sequence.
User: tsnorri
haplotypes,Calculate SMD and Hamming and Jaccard distances between each pair of samples in a set of variant files.
User: tsnorri
haplotypes,Chromosome Overlap: code accompanying "Refining the genetic risk of breast cancer with rare haplotypes and pattern-mining" by Letsou et al. DOI: 10.26508/lsa.202302183
User: wletsou
Home Page: https://www.life-science-alliance.org/content/6/10/e202302183
haplotypes,A novel bioinformatics tool in Java to build phased long alleles of STR+SNP+InDel from VCF file
User: xuewenwanguga
haplotypes,Long sequencing reads classifier
User: yaoli3
haplotypes,A set of functions for filtering erroneous sequences in eDNA metabarcoding data
User: yskoseki
haplotypes,Haplotype Fixation Index for crop populations with homozygous nature, such as rice
User: zhuochenbioinfo
haplotypes,Construct gene haplotype with VCF format files and snpEff annotation.
User: zhuochenbioinfo
haplotypes,A data and code repository for the paper of the same name.
User: zjwinn
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