Topic: metagenomes Goto Github
Some thing interesting about metagenomes
Some thing interesting about metagenomes
metagenomes,Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
User: althonos
metagenomes,Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
User: althonos
Home Page: https://pyrodigal.readthedocs.org
metagenomes,PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
User: althonos
metagenomes,Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
User: cafferychen777
Home Page: https://www.microbiomestat.wiki/
metagenomes,MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
User: cafferychen777
Home Page: https://www.microbiomestat.wiki/
metagenomes,scripts for microbiome analysis
User: chartiza
metagenomes,CAP Citrus Project for HLB
Organization: citrus-hlb-micro
Home Page: https://citrus-hlb-micro.github.io/
metagenomes,
User: cmungall
Home Page: https://bioportal.bioontology.org/ontologies/GOLDTERMS?p=classes
metagenomes,A few scripts to help with the installation of MetaErg, the contig/bin annotation pipeline
User: finesim97
metagenomes,bacterial metagenomes and pangenome graphs from both illumina and long reads
User: gauravcodepro
metagenomes,Minimum Information about any (X) Sequenceโ (MIxS) specification
Organization: genomicsstandardsconsortium
Home Page: https://w3id.org/mixs
metagenomes,Arche: a functional-optimized annotator for microbial meta(genomes)
User: gundizalv
metagenomes,A complete pipeline for metagenomic analysis
User: jtamames
metagenomes,This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
User: lauralwd
metagenomes,Code associated with the Ley Lab animal gut metagenome assembly project
Organization: leylabmpi
metagenomes,PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
User: linsalrob
metagenomes,MetaCarvel: A scaffolder for metagenomes
Organization: marbl
metagenomes,FOCUS: An Agile Profiler for Metagenomic Data
User: metageni
metagenomes,Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
User: mtisza1
metagenomes,memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
User: muellan
metagenomes,Assembly and binning of metagenomes
Organization: nf-core
Home Page: https://nf-co.re/mag
metagenomes,
User: raw937
metagenomes,To reproduce some results from "CAMISIM: simulating metagenomes and microbial communities". Authors: Simon Konnov, Ciara Makievskaya, Ruslan Gumerov
Organization: reproducibility-fbb-msu
metagenomes,An algorithm for recovering haplotypes from metagenomes
User: samstudio8
Home Page: https://gretel.readthedocs.io/en/latest/
metagenomes,Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
Organization: segatalab
metagenomes,This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye Rozov, Gil Goldshlager, Eran Halperin, and Ron Shamir
Organization: shamir-lab
metagenomes,This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
Organization: shamir-lab
metagenomes,Software for prediction of plasmid sequences in metagenomic assemblies
User: smaegol
metagenomes,CWL implementation for DEMIC
User: suzuki-shm
metagenomes,XGBoost implementation for bacteria family identification
User: tharos-ux
metagenomes,Application of Recurrent Neural Network to Metagenomic
User: xelanac
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