Topic: genomes Goto Github
Some thing interesting about genomes
Some thing interesting about genomes
genomes,GENA-LM is a transformer masked language model trained on human DNA sequence.
Organization: airi-institute
Home Page: https://www.biorxiv.org/content/10.1101/2023.06.12.544594
genomes,Repository of assembled reference genomes of the green model alga Chlamydomonas reinhardtii including files optimised for visualisation in IGV
User: andreholzer
Home Page: https://data.plantsci.cam.ac.uk/PlantMet/index.php/genomes/
genomes,Randomly download genomes from NCBI RefSeq and Genbank
User: bielasilva
genomes,A modern genomics framework for julia
Organization: biojulia
Home Page: https://biojulia.dev
genomes,Hail helper functions for the gnomAD project and Translational Genomics Group
Organization: broadinstitute
Home Page: https://gnomad.broadinstitute.org
genomes,A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
User: cumbof
genomes,Generative art project using GAs and swarm mechanics curated as part of the Norman Rea Gallery's Virtually Real exhibition.
User: danielfamiyeh
Home Page: https://danielfamiyeh.github.io/polydish/src/
genomes,This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
Organization: debbiemarkslab
genomes,The published study can be accessed on https://www.mdpi.com/1999-4915/12/12/1414
User: dezordi
genomes,Repository accompanying review in avian genomes by Bravo et al.
Organization: edwards-bird-lab
genomes,A Genome generation library, for all your genetic algorithmic needs.
User: fiberwire
genomes,Teaching materials for SymbNET course: from MAGs to GEMs
User: franciscozorrilla
Home Page: https://www.ebi.ac.uk/training/events/symbnet-2022/
genomes,graphanalyzer python package for dealing with paf and gfa alignments.
User: gauravcodepro
genomes,A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
User: guyleonard
genomes,:white_circle: :arrow_right: :mag: :information_source: A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.
User: guyleonard
genomes,Client for downloading and a phylogenetic decompression of the BIGSIdata de Bruijn graphs
User: karel-brinda
Home Page: http://brinda.eu/mof
genomes,Phylogenetic compression of extremely large genome collections [661k âđđ˛đđśđ | BIGSIdata âđ°đ´đđśđ | AllTheBact'23 âđłđąđđśđ]
User: karel-brinda
Home Page: https://brinda.eu/mof
genomes,Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
User: karel-brinda
Home Page: http://brinda.eu/mof
genomes,Supplementary repository for "Efficient and robust search of microbial genomes via Phylogenetic Compression"
User: karel-brinda
Home Page: http://karel-brinda.github.io/mof
genomes,Classification model predicting the type of microbe from provided features
User: kenan-erol
genomes,H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
User: kishwarshafin
genomes,Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
User: kjolley
Home Page: https://pubmlst.org/software/bigsdb/
genomes,Genome browser to visualize and analyze genomic data
User: lebinary
Home Page: https://www.youtube.com/watch?v=jPPwD95kp28&ab_channel=BinhLe
genomes,
Organization: leylabmpi
genomes, A pipeline based on unmapped reads, which combines different tools for extends contigs and closing gaps present in the genomes
User: lucaspompeun
Home Page: https://www.sbmicrobiologia.org.br/30cbm-anais/resumos/R0610-2.pdf
genomes,Repository for the TRANSIT and TPP tools developed by the Ioerger Lab
User: mad-lab
genomes,Final Project WS2019: Alexander Amberger, Matthias Gruber, Simone Zimmerl
User: matthias-gruber
genomes,Download genomes from NCBI GenBank FTP site
User: michalbukowski
genomes,Identification of putative duplicated genes among bacterial genomes
Organization: molevol-ub
genomes,Constructing structures of evolutionary genomic relationships based on their local pairwise alignment
User: npanuhin
genomes,The second part of https://github.com/npanuhin/BIOCAD
User: npanuhin
Home Page: https://github.com/npanuhin/BIOCAD
genomes,Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
User: orangesi
genomes,Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
Organization: palmuc
genomes,This script uses NCBI's Entrez Programming Utilities to perform searches of NCBI databases. This script can return either the complete database records, or the IDs of the records.
User: paulstothard
genomes,Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
User: pfeiferd
genomes,A selection of databases for Genestrip
User: pfeiferd
genomes,"ć¤çŠĺşĺ çť"(plantgenomes)ĺžŽäżĄĺ Źäźĺˇ
Organization: plantgenomes
Home Page: https://plantgenomes.github.io/
genomes,Assembled Genomes Compressor
Organization: refresh-bio
genomes,Scripts and procedures for detecting positively selected genes and codons in primates
User: robinvanderlee
Home Page: https://doi.org/10.1093/nar/gkx704
genomes,Python implementation of a program designed to create the reverse complement of a genome
User: rrando10
genomes,Shiny app that plots NCBI genomes size versus protein count
User: smsaladi
Home Page: https://saladi.shinyapps.io/genome_size_vs_protein_count/
genomes,A mosaic genome painting tool for plant genomes
Organization: southgreenplatform
Home Page: https://gemo.readthedocs.io/en/latest/index.html
genomes,Unified PHYling pipeline for species tree building from annotated genomes (see https://github.com/stajichlab/AAFTF and https://github.com/nextgenusfs/funannotate for assembly and annotation steps)
Organization: stajichlab
genomes,The first app for Mobile DNA Sequence Alignment and Analysis
User: stuckinaboot
genomes,Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
User: tariqdaouda
Home Page: http://pygeno.iric.ca
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