Topic: genbank Goto Github
Some thing interesting about genbank
Some thing interesting about genbank
genbank,a python utility to clean PROTEIN sequences and headers
User: abhijeetsingh1704
genbank,Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
Organization: bebop
genbank,A Go package for engineering organisms.
Organization: bebop
Home Page: https://pkg.go.dev/github.com/bebop/poly
genbank,MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members. In MetaShot, third party tools and new developed Python and Bash scripts are integrated to analyze paired-end (PE) Illumina sequences, offering an automated procedure covering all the analysis steps from raw data management to taxonomic profiling. It is designed to analyze both DNA-Seq and RNA-Seq data.
User: bfosso
genbank,
Organization: biojulia
genbank,A Python package for Biopython that gives feature annotations from GenBank records a new and better life
Organization: biosustain
Home Page: https://biosustain.github.io/goodbye-genbank/
genbank,Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
User: bjornfjohansson
genbank,Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Organization: cdcgov
Home Page: https://cdcgov.github.io/seqsender/
genbank,GenBank Record downloader for taxonomists
User: changwanseo
genbank,flat-file sequence/database utils
User: dnanto
genbank,:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/
genbank,GET_HOMOLOGUES: a versatile software package for pan-genome analysis
User: eead-csic-compbio
genbank,F# library for accessing and manipulating bioinformatic datasets.
Organization: fsprojects
Home Page: https://fsprojects.github.io/BioProviders/
genbank,a tool for automatic construction of molecular data matrix for phylogenetic inference based on GenBank records
User: hansiu
genbank,Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
User: hobnobmancer
Home Page: https://hobnobmancer.github.io/cazy_webscraper/
genbank,Parser (unofficial) for ncbi GenBank data
User: j-i-l
Home Page: https://j-i-l.github.io/GenBankParser/
genbank,Scripts to download genomes from the NCBI FTP servers
User: kblin
genbank,A Go package for designing DNA.
User: koeng101
genbank,Parse sequence files (GenBank, FASTA, SnapGene, SBOL) and accession IDs (NCBI, iGEM) to a common format
Organization: lattice-automation
genbank,A new annotation file format based on JSON, containing all information stored in the GenBank format but with advantageoius parsing and information structure properties.
User: lehwark
Home Page: https://chlorobox.mpimp-golm.mpg.de/GBSON.html
genbank,Guia de programas e ferramentas de bioinformática e química computacional
User: lucaspalmeira
genbank,Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
User: maximilianh
genbank,DNA barcoding analysis pipeline
User: mdcjansen
genbank,LAVA: Longitudinal Analysis of Viral Alleles
User: michellejlin
genbank,Easy-to-use web application for visualization and comparison of genomes in Genbank file
User: moshi4
genbank,A genome visualization python package for comparative genomics
User: moshi4
Home Page: https://moshi4.github.io/pyGenomeViz
genbank,DEPRECATED: Use Cenote-Taker 3 instead
User: mtisza1
genbank,Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
User: mtisza1
genbank,Nextstrain build for mpox virus
Organization: nextstrain
Home Page: https://nextstrain.org/mpox
genbank,A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Organization: nextstrain
genbank,Easy download and manage GenBank data, and alignments for phylogenetics
User: oleon12
genbank,ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
User: pirovc
Home Page: https://pirovc.github.io/ganon/
genbank,Tools to download, parse and filter GenBank files
User: robaina
genbank,An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
Organization: ropensci
Home Page: https://docs.ropensci.org/phylotaR
genbank,Perl script to convert GenBank records to FASTA format
User: santiagosnchez
genbank,GenBank Submission 2018/11/09
Organization: shawhahnlab
genbank,GCModeller Individual Components: GCModeller base core assembly library on common biological database read and write I/O
Organization: smrucc
genbank,This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
User: terrimporter
genbank,The most awful genbank file you'll ever need to parse.
User: timothystiles
genbank,GenBank Metadata Extraction Tool
User: toddknutson
genbank,a toolbox for utilize organelle genomic data
User: wpwupingwp
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